Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E24
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61949-7|AAB03155.1| 510|Caenorhabditis elegans Hypothetical pr... 32 0.34
U61949-8|AAU05569.1| 332|Caenorhabditis elegans Hypothetical pr... 31 0.46
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 31 0.46
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 31 0.46
Z93380-2|CAB07596.1| 340|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z93380-3|CAB07600.1| 339|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z93380-1|CAB07598.2| 337|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81587-1|CAB04701.1| 340|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 29 2.4
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical... 29 2.4
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein. 29 2.4
Z93380-7|CAB07603.2| 335|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z82053-11|CAB04839.2| 335|Caenorhabditis elegans Hypothetical p... 28 5.6
Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical pr... 28 5.6
L25599-4|ABA54417.1| 145|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z81587-2|CAB04702.2| 339|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL117207-16|CAH60778.1| 402|Caenorhabditis elegans Hypothetical... 27 7.4
>U61949-7|AAB03155.1| 510|Caenorhabditis elegans Hypothetical
protein F49E8.7a protein.
Length = 510
Score = 31.9 bits (69), Expect = 0.34
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Frame = +3
Query: 24 LKFVIISALLVVAHADIDKFLGRAVSIGISP-NITELGTGCDWFT--VTKVSEVHCTCDG 194
L+ +I S L V A+I F + S G+ P N ++ W + K+ + +C CD
Sbjct: 138 LENLIKSFHLNVKSAEIFPF--DSDSFGLPPINCRKILNPLLWMKAGIEKLIQNNCQCDQ 195
Query: 195 RTNVPLISIKQESDKNSDARFAAVEIKSFAEVEQTVKTAKCECGDKEHAFL 347
VPLI++ + K + F + I SF +E T C D E FL
Sbjct: 196 PPIVPLITLLDLAPK--EGHFQELAIASFF-LENTAHKLDYSCSDDEKKFL 243
>U61949-8|AAU05569.1| 332|Caenorhabditis elegans Hypothetical
protein F49E8.7b protein.
Length = 332
Score = 31.5 bits (68), Expect = 0.46
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 156 VTKVSEVHCTCDGRTNVPLISIKQESDKNSDARFAAVEIKSFAEVEQTVKTAKCECGDKE 335
+ K+ + +C CD VPLI++ + K + F + I SF +E T C D E
Sbjct: 5 IEKLIQNNCQCDQPPIVPLITLLDLAPK--EGHFQELAIASFF-LENTAHKLDYSCSDDE 61
Query: 336 HAFL 347
FL
Sbjct: 62 KKFL 65
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
nucleotide exchange factorfor RAS protein.
Length = 1413
Score = 31.5 bits (68), Expect = 0.46
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 372 YYVVYSAPFTPNGLTLIVLNARTIPTQADLDKTVSGIPNLSGRTDYGVSRGLQ*IS 539
+ + Y + TPN L ++L IPT L + G L+GR D S GL IS
Sbjct: 686 FLISYRSFCTPNDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSHGLSAIS 741
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 31.5 bits (68), Expect = 0.46
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 372 YYVVYSAPFTPNGLTLIVLNARTIPTQADLDKTVSGIPNLSGRTDYGVSRGLQ*IS 539
+ + Y + TPN L ++L IPT L + G L+GR D S GL IS
Sbjct: 686 FLISYRSFCTPNDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSHGLSAIS 741
>Z93380-2|CAB07596.1| 340|Caenorhabditis elegans Hypothetical
protein F28C12.2 protein.
Length = 340
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 463 SKSACVGIVLAFSTIKVSPFGVN 395
S+S C+ IVL FS I +S FG N
Sbjct: 244 SQSICISIVLQFSCIMISSFGSN 266
>Z93380-3|CAB07600.1| 339|Caenorhabditis elegans Hypothetical
protein F28C12.4 protein.
Length = 339
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -2
Query: 463 SKSACVGIVLAFSTIKVSPFGVN 395
S+S C+ IVL F I VS FGVN
Sbjct: 245 SQSVCILIVLQFVCISVSSFGVN 267
>Z93380-1|CAB07598.2| 337|Caenorhabditis elegans Hypothetical
protein F28C12.1 protein.
Length = 337
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -2
Query: 463 SKSACVGIVLAFSTIKVSPFGVN 395
S+S C+ IVL F+ I +S FGVN
Sbjct: 243 SQSVCILIVLQFACIMLSSFGVN 265
>Z81587-1|CAB04701.1| 340|Caenorhabditis elegans Hypothetical
protein T06G6.1 protein.
Length = 340
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 463 SKSACVGIVLAFSTIKVSPFGVN 395
S+S C+ IVL FS +S FGVN
Sbjct: 245 SQSVCILIVLQFSCTMISSFGVN 267
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -2
Query: 187 QVQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNLSISA*ATTKSA 44
Q WT+ L+TV +++P P +++ + + N ++A T K +
Sbjct: 243 QPSWTADVLITVRETKPKPRRILVDQRKINPNILNNRQLAAIITLKDS 290
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -2
Query: 187 QVQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNLSISA*ATTKSA 44
Q WT+ L+TV +++P P +++ + + N ++A T K +
Sbjct: 243 QPSWTADVLITVRETKPKPRRILVDQRKINPNILNNRQLAAIITLKDS 290
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -2
Query: 187 QVQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNLSISA*ATTKSA 44
Q WT+ L+TV +++P P +++ + + N ++A T K +
Sbjct: 243 QPSWTADVLITVRETKPKPRRILVDQRKINPNILNNRQLAAIITLKDS 290
>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
protein Y75B8A.22 protein.
Length = 1353
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 273 KSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDNYYV 380
K + E+E+ ++ AK D H F AIK+ DNY++
Sbjct: 104 KMYWELEENLRRAKTAFSDA-HFFTAIKKRIDNYFI 138
>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
Length = 1353
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 273 KSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDNYYV 380
K + E+E+ ++ AK D H F AIK+ DNY++
Sbjct: 104 KMYWELEENLRRAKTAFSDA-HFFTAIKKRIDNYFI 138
>Z93380-7|CAB07603.2| 335|Caenorhabditis elegans Hypothetical
protein T26E3.9 protein.
Length = 335
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 463 SKSACVGIVLAFSTIKVSPFGVN 395
S+S C+ IVL F+ I +S +GVN
Sbjct: 241 SQSVCILIVLQFACILMSSYGVN 263
>Z82053-11|CAB04839.2| 335|Caenorhabditis elegans Hypothetical
protein T26E3.9 protein.
Length = 335
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 463 SKSACVGIVLAFSTIKVSPFGVN 395
S+S C+ IVL F+ I +S +GVN
Sbjct: 241 SQSVCILIVLQFACILMSSYGVN 263
>Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 234 DKNSDARFAAVEIKSFAEVEQTVKTAKCE 320
DK+S A+FAA+ KS AE++ KT E
Sbjct: 174 DKDSVAKFAALNTKSLAELKINGKTEVAE 202
>Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 234 DKNSDARFAAVEIKSFAEVEQTVKTAKCE 320
DK+S A+FAA+ KS AE++ KT E
Sbjct: 174 DKDSVAKFAALNTKSLAELKINGKTEVAE 202
>L25599-4|ABA54417.1| 145|Caenorhabditis elegans Hypothetical
protein F54H12.7 protein.
Length = 145
Score = 27.9 bits (59), Expect = 5.6
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -2
Query: 346 KNACSLSPHSHFAVFTVCSTSAKDFISTAANRA-SEFLSDSCLIEINGTLVLPSQVQWTS 170
K +SP S C+T K I + + + SE+L + + GTL P Q +W S
Sbjct: 47 KKVPKVSPASRKEDIPGCATVEKVSIRSGSEISQSEWLDNL----VPGTLAKP-QSRWES 101
Query: 169 LTLVTVNQSQPVPSSVML 116
+T N P+ SSV+L
Sbjct: 102 ITGFIDNYKYPIISSVVL 119
>Z81587-2|CAB04702.2| 339|Caenorhabditis elegans Hypothetical
protein T06G6.2 protein.
Length = 339
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 463 SKSACVGIVLAFSTIKVSPFGVN 395
S+S C+ IVL F+ I +S GVN
Sbjct: 245 SQSVCILIVLQFACILISSLGVN 267
>AL117207-16|CAH60778.1| 402|Caenorhabditis elegans Hypothetical
protein Y60A3A.24 protein.
Length = 402
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 186 CDGRTNVPLISIKQESDKNSDARFAAVEIKSFAEVEQTVKTAKCE 320
C TN P KQE D+ + AR+ A + + E+T K E
Sbjct: 170 CANVTNTPNKKTKQERDRENTARYDAKNNQKLVDNEKTHSELKEE 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,899,238
Number of Sequences: 27780
Number of extensions: 264296
Number of successful extensions: 644
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -