Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E23
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30680.1 68414.m03751 toprim domain-containing protein contai...    30   0.68 
At1g63370.1 68414.m07164 flavin-containing monooxygenase family ...    27   4.8  
At1g62620.1 68414.m07065 flavin-containing monooxygenase family ...    27   4.8  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   8.4  
At1g30660.1 68414.m03749 toprim domain-containing protein contai...    27   8.4  

>At1g30680.1 68414.m03751 toprim domain-containing protein contains
           Pfam profile: PF01751 toprim domain
          Length = 709

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 72  QGIPIRKCPAGEHSVLYCPQQAEPSCDNPTVHEMDPPSGLCDVPQCF 212
           QG+    CP G+HS L CP     +    ++     P G      CF
Sbjct: 119 QGVDAENCPPGQHSGLICPTCEGGNSGEKSLSLFIAPDGSSATWNCF 165


>At1g63370.1 68414.m07164 flavin-containing monooxygenase family
           protein / FMO family protein similar to FMO5 from Cavia
           porcellus [SP|P49109]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like
          Length = 450

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 172 WTHHQGCATYRSASATYRTFETLKPESASNCQNVKYNF 285
           WTH    + +   S  Y+  +T+  +   +C   KY+F
Sbjct: 256 WTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHF 293


>At1g62620.1 68414.m07065 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase 3 (FMO3) from Rattus
           norvegicus [GI:12006730], FMO1 from Canis familiaris]
           [GI:15420722], FMO1 from Homo sapiens [SP|Q01740];
           contains Pfam profile: PF00743 Flavin-binding
           monooxygenase-like
          Length = 450

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 172 WTHHQGCATYRSASATYRTFETLKPESASNCQNVKYNF 285
           WTH    + +   S  Y+  +T+  +   +C   KY+F
Sbjct: 256 WTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHF 293


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
           identical to auxin transport protein; BIG [Arabidopsis
           thaliana] GI:21779966; contains Pfam profiles PF02207:
           Putative zinc finger in N-recognin, PF00569: Zinc finger
           ZZ type
          Length = 5098

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 162 VHEMDPPSGLCDVPQ 206
           +H++D P+G+CD PQ
Sbjct: 749 LHKVDTPAGICDGPQ 763


>At1g30660.1 68414.m03749 toprim domain-containing protein contains
           Pfam profile PF01751: Toprim domain
          Length = 321

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 72  QGIPIRKCPAGEHSVLYCPQ 131
           QGI  + CP G  S L CP+
Sbjct: 45  QGIDAQNCPPGVRSCLICPK 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,648,184
Number of Sequences: 28952
Number of extensions: 170014
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)