Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E22
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    29   1.1  
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688...    29   1.1  
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    28   1.5  
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359...    28   1.9  
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220...    28   1.9  
09_06_0150 - 21225086-21225511,21225775-21226125,21227180-212277...    27   3.4  
02_04_0256 + 21331396-21332268                                         27   3.4  
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916...    26   5.9  
08_02_1583 + 28036125-28037030,28037411-28037656                       26   5.9  
08_01_0759 - 7199085-7199414                                           26   5.9  
08_01_0755 - 7159471-7160124                                           26   5.9  
12_01_0344 + 2647044-2647238,2647452-2647553,2647789-2647911,264...    26   7.8  
02_05_0432 + 28936293-28936796,28937382-28939250                       26   7.8  
02_01_0669 + 4974567-4974610,4975142-4975211,4975355-4975429           26   7.8  

>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
            44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 51   LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKV 212
            L G+ SR V    P + ++ Y D+ EQW   R R  +  L ++ + + G+  +V
Sbjct: 886  LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935


>01_06_0996 +
           33667663-33667900,33668019-33668091,33668785-33668841,
           33668970-33669067,33669482-33669637,33669744-33670366,
           33670484-33670560,33671551-33671805,33671950-33672067,
           33672174-33672345,33672434-33672975
          Length = 802

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 49  FWSASTA-GTCSLKSLVTTLNNMRISRSSGPT 141
           FW  ST    CS   L+  LNN  +SR +GP+
Sbjct: 40  FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71


>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 156 AGAPWSWPTAPADPHIVQCSNQALQRARTG 67
           AG PW+W  +PA   + +C   A +R  TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435


>07_01_0476 -
           3593555-3594253,3594684-3594850,3594866-3594964,
           3595620-3595806,3595880-3595948,3596551-3596752,
           3597124-3597362,3598374-3598637
          Length = 641

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 140 LQGAPASGCTNCQLRRHLRCYGQGTYN 220
           L G P  G  N  +  +LRCYG  +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328


>03_02_0798 -
           11321590-11321685,11321802-11321888,11321972-11322082,
           11322169-11322515,11322570-11322612,11322669-11322749,
           11323321-11323596,11325277-11325552
          Length = 438

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 162 PLAGAPWSWPTAPADPHIVQCSNQALQR 79
           PL+GAP   P AP  P  + C   AL +
Sbjct: 15  PLSGAPRRRPAAPTRPSALVCGTYALTK 42


>09_06_0150 -
           21225086-21225511,21225775-21226125,21227180-21227718,
           21227813-21227929,21228038-21228290
          Length = 561

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 4   ANTQRCSPSYSSYQFFWSASTAGTCSLKSLVTTLNNMRISRSSG 135
           A ++RC  SYS       + T+  CS  +  TT      S S G
Sbjct: 9   AGSERCCGSYSPSADVSESETSSDCSAPTTTTTTRRFASSSSRG 52


>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -2

Query: 161 RLPAHPGVGPLLRLILILFNVVTRLFNEHVPAVDADQK 48
           RL AHPG  P +RLIL+  + +  LF     A  AD K
Sbjct: 143 RLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLK 178


>11_04_0090 -
           13391028-13391117,13391369-13391502,13391532-13391659,
           13391684-13391718,13391719-13392159
          Length = 275

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 135 PTAPADPHIVQCSNQALQRARTG 67
           PTAP   H + CS     RA TG
Sbjct: 44  PTAPPKHHSLSCSGSQAPRATTG 66


>08_02_1583 + 28036125-28037030,28037411-28037656
          Length = 383

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 162 PLAGAPWSWPTAPAD 118
           PLA    SWPT+PAD
Sbjct: 179 PLAAVVESWPTSPAD 193


>08_01_0759 - 7199085-7199414
          Length = 109

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 171 LVHPLAGAPWSWPTAPADPHIVQCSNQALQRARTG 67
           +V P A AP   P+A A   +  C + ALQ  R G
Sbjct: 31  VVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDG 65


>08_01_0755 - 7159471-7160124
          Length = 217

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 171 LVHPLAGAPWSWPTAPADPHIVQCSNQALQRARTG 67
           +V P A AP   P+A A   +  C + ALQ  R G
Sbjct: 31  VVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDG 65


>12_01_0344 +
           2647044-2647238,2647452-2647553,2647789-2647911,
           2648066-2648183,2649022-2649347
          Length = 287

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 40  YQFFWSASTAGTCSLKSLVTTLNNMRISRSSGP 138
           +  +WS + +  C L+SL     N R+S   GP
Sbjct: 232 WYLWWSKAASNACQLQSLPLN-RNWRLSSDGGP 263


>02_05_0432 + 28936293-28936796,28937382-28939250
          Length = 790

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 81  VEEPGYYIEQYEDQPEQWANSRV 149
           V  P   + + E+ PEQW  SR+
Sbjct: 97  VRSPELVVPELEELPEQWRRSRI 119


>02_01_0669 + 4974567-4974610,4975142-4975211,4975355-4975429
          Length = 62

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 119 SAGAVGQLQGAPASGCTNCQLRRHL 193
           ++ ++GQ Q A A+G T C +RR++
Sbjct: 13  TSSSMGQGQQASANGVTACNIRRNI 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,998,620
Number of Sequences: 37544
Number of extensions: 169934
Number of successful extensions: 497
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)