Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E22
         (324 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22300.1 68417.m03225 phospholipase/carboxylesterase family p...    27   2.2  
At4g21440.1 68417.m03099 myb family transcription factor (MYB102...    27   2.9  
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a...    27   3.8  
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge...    26   5.0  
At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /...    26   6.7  
At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to...    26   6.7  
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    25   8.8  
At2g38770.1 68415.m04760 expressed protein                             25   8.8  
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ...    25   8.8  

>At4g22300.1 68417.m03225 phospholipase/carboxylesterase family
           protein similar to acyl-protein thioesterase-1 [Homo
           sapiens] GI:9965372; contains Pfam profile PF02230:
           Phospholipase/Carboxylesterase family
          Length = 471

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 159 LAGAPWSWPTAPADPHIVQCSNQALQRA 76
           L+ A W +P+AP +P  V C+N A+ R+
Sbjct: 31  LSNASWLFPSAPFNP--VTCNNGAVMRS 56


>At4g21440.1 68417.m03099 myb family transcription factor (MYB102)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 350

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 25  PSYSSYQFFWSASTAGTCSLKSLVTTLNNMRISRSSGPT 141
           PSYS   F ++ S   T S     TTLN+  I+ SS  T
Sbjct: 285 PSYSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCST 323


>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 1007

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 152 PASGCTNCQLRRHLRCYGQGTYNWKRKSQAQCPWLRRSH*PNEVGS 289
           PASG      R+ LR + +  +NW++K   +   +R +H   +VGS
Sbjct: 55  PASGSLFLFDRKVLRYFRKDGHNWRKKKDGKT--IREAHEKLKVGS 98


>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
           family protein / SET domain-containing protein similar
           to trithorax-like protein 1 [Arabidopsis thaliana]
           GI:12659210; contains Pfam domain, PF00628: PHD-finger
           and PF00856: SET domain
          Length = 1056

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 164 CTNCQLRRHLRCYGQ 208
           C  C++  H RCYGQ
Sbjct: 611 CDKCRMMVHTRCYGQ 625


>At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 [Glycine max] GI:5669846; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 373

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 202 IAPEVPSELTVSAPACRRTLELAHCSG 122
           IAPE P E   +   C + +E AH +G
Sbjct: 105 IAPESPYEWKCNKDDCHQWIEFAHING 131


>At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to
           acyl CoA reductase [Simmondsia chinensis] GI:5020215;
           contains Pfam profile PF03015: Male sterility protein
          Length = 409

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 21  FAKLFLVSVLLVGVNSRYVLVEEPGYYIEQY 113
           FAK  +   LL+ V++ YV  E PG+ +E++
Sbjct: 74  FAKKCVKPKLLLHVSTVYVCGERPGHIVEKH 104


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 162 GALTVNSDGTSGAMVKVPITGNENHRLSALGSVD 263
           G++ ++S     A    P+  N N RLS  GS+D
Sbjct: 855 GSMPLHSPSNQTATPLFPVVINNNSRLSPSGSLD 888


>At2g38770.1 68415.m04760 expressed protein
          Length = 1509

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 194 RCYGQGTYNWKRKSQAQCPWLRRSH 268
           + YG GTY++KR   A+ P    SH
Sbjct: 3   KVYGTGTYDFKRHRVAEYPLELPSH 27


>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
           identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
           thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
           PF00096: Zinc finger, C2H2 type
          Length = 267

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 198 HLRCRLS*QLVHPLAGAPWSWPTAPADPHIV 106
           H+R  +   L+HPL   P S+ ++ ADP  V
Sbjct: 23  HMRSHM---LIHPLPSQPESYSSSMADPGFV 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,006,710
Number of Sequences: 28952
Number of extensions: 125839
Number of successful extensions: 384
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)