Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E21
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    29   0.64 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.9  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 19/79 (24%), Positives = 37/79 (46%)
 Frame = +1

Query: 295 HVTCNQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQHGLPDISDC*EKALNFIKQLL 474
           HV  N +      V    A+K Y +H  ++W     + +  LP +SD  E   N+ ++++
Sbjct: 136 HVHKNDINRFGTKVYEELARK-YPQHSLESWRQHYKYMKKRLPPVSDSDES--NYCQRII 192

Query: 475 MKFTSSSCNLKQKCYKDIM 531
           +K  SS  +  Q  ++  +
Sbjct: 193 VKPYSSQKDYTQSTHEQTL 211


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 397 KNHCQHGLPDISDC*EKALNFIKQLLMKFTSSSCNLKQKCYKDI 528
           K + +  L  ISD     L+     L++  SS   ++Q CY  +
Sbjct: 13  KRYLEQALEPISDADASVLSDYAMALLRHDSSEEEVRQLCYSQL 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,000
Number of Sequences: 5004
Number of extensions: 43556
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)