Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E20
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54670.1 68418.m06807 kinesin-like protein C (KATC)                 30   0.62 
At5g28930.1 68418.m03578 hypothetical protein various predicted ...    29   1.1  
At4g04700.1 68417.m00690 calcium-dependent protein kinase, putat...    29   1.9  
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    28   2.5  
At4g33230.1 68417.m04730 pectinesterase family protein contains ...    27   5.8  
At4g05470.1 68417.m00829 F-box family protein (FBL21) contains s...    27   5.8  
At1g15520.1 68414.m01867 ABC transporter family protein similar ...    27   5.8  
At4g15233.1 68417.m02334 ABC transporter family protein similar ...    27   7.6  
At2g26910.1 68415.m03228 ABC transporter family protein similar ...    27   7.6  
At1g48090.2 68414.m05363 C2 domain-containing protein contains P...    27   7.6  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    27   7.6  

>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
          Length = 754

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 22/63 (34%), Positives = 36/63 (57%)
 Frame = +1

Query: 190 MQLYNSVIVSDYKAAVKTTFQLEKECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGED 369
           +QLYNS +  D   A +T  + EKE R+ +I ++ N   L+GQ + ++   +    S ED
Sbjct: 208 LQLYNSKLQGDLDEAHETIKRGEKE-RTAIIENIGN---LKGQFSALQEQLAASKASQED 263

Query: 370 IVK 378
           I+K
Sbjct: 264 IMK 266


>At5g28930.1 68418.m03578 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 509

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 181 DPVMQLYNSVIVSDYKAAVKTTFQLEKECRSDV 279
           D V+  YNSV V D ++   T F  EKE + DV
Sbjct: 286 DDVVSFYNSVDVPDGQSCGGTNFNNEKEFQGDV 318


>At4g04700.1 68417.m00690 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423;
           contains protein kinase domain, Pfam:PF00069
          Length = 485

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 226 KAAVKTTFQLEKECRSDVISSVVNKLLLEGQPNVVEYAYSLWYRSGEDIVKVY 384
           K  +KT  + ++EC  DV   +     L G+PN+VE+  +   +    IV  Y
Sbjct: 57  KTILKTKLK-DEECEEDVKREIRIMKQLSGEPNIVEFKNAYEDKDSVHIVMEY 108


>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 411 KQQSKLYRKVNFDYVLTGSVPETVSVFDD 325
           KQ  K+YRK+    V  G+VPE  +V  D
Sbjct: 655 KQIEKIYRKIALKLVREGAVPEEPAVASD 683


>At4g33230.1 68417.m04730 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 609

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +1

Query: 82  VLSALVTRVSLTPLCNNTAVSITSNDSPPFNNADPVMQLYNSVIV--SDYKAAVKTTFQL 255
           ++  L       P C NT  + T  D+P     DP   L ++++    D     K    L
Sbjct: 94  IIQTLCNSTLYKPTCQNTLKNETKKDTP---QTDPRSLLKSAIVAVNDDLDQVFKRVLSL 150

Query: 256 EKECRSDVISSVVNKLLLE 312
           + E + D  +    KLL++
Sbjct: 151 KTENKDDKDAIAQCKLLVD 169


>At4g05470.1 68417.m00829 F-box family protein (FBL21) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 576

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 200 YNCITGSALLNGGESLEVIETAVLLHRGV 114
           Y  +T   ++NG E L ++ET V+ H  +
Sbjct: 143 YEPMTNKGVMNGIEKLPLLETLVIFHSSI 171


>At1g15520.1 68414.m01867 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1423

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 351 PETVSVFDDVWLSFEE*FIYDGADD 277
           PET ++FDD+ L  E   IY+G  D
Sbjct: 388 PETFNLFDDIILIAEGEIIYEGPRD 412


>At4g15233.1 68417.m02334 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, PDR5-like ABC transporter
           [Spirodela polyrhiza] GI:1514643; contains Pfam profile
           PF00005: ABC transporter
          Length = 1168

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 351 PETVSVFDDVWLSFEE*FIYDGADDVTSAF 262
           PET  +FDD+ L  E   IY G  D   +F
Sbjct: 354 PETFELFDDLILMGEGKIIYHGPRDFVCSF 383


>At2g26910.1 68415.m03228 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1420

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 351 PETVSVFDDVWLSFEE*FIYDGADD 277
           PET  +FDDV L  E   IY G  D
Sbjct: 369 PETYELFDDVILMSEGQIIYQGPRD 393


>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 3427

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 417  FVKQQSKLYRKVNF--DYVLTGSVPETVSVFDDVWLS 313
            FV QQSK   +V+   D   TG+ P+T+  F   W++
Sbjct: 3131 FVHQQSKRRLRVSIERDVGETGAAPKTIRFFVPYWIT 3167


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 4144

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 417  FVKQQSKLYRKVNF--DYVLTGSVPETVSVFDDVWLS 313
            FV QQSK   +V+   D   TG+ P+T+  F   W++
Sbjct: 3131 FVHQQSKRRLRVSIERDVGETGAAPKTIRFFVPYWIT 3167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,041,283
Number of Sequences: 28952
Number of extensions: 142033
Number of successful extensions: 344
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)