Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E19
         (372 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24838| Best HMM Match : NCD1 (HMM E-Value=2.3e-32)                  28   2.1  
SB_51310| Best HMM Match : NCD1 (HMM E-Value=2.3e-32)                  28   2.1  
SB_25388| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_7182| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_24918| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.5  
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)              26   8.5  

>SB_24838| Best HMM Match : NCD1 (HMM E-Value=2.3e-32)
          Length = 539

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 262 EKSPESQMAWLTLWTVSTTKLISEAKDGVYTYDYTT 369
           +K+PE   +W+  WT S +  +S A   V +  + T
Sbjct: 86  DKTPEKNSSWIDYWTPSQSPNVSRATTPVTSATFVT 121


>SB_51310| Best HMM Match : NCD1 (HMM E-Value=2.3e-32)
          Length = 423

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 262 EKSPESQMAWLTLWTVSTTKLISEAKDGVYTYDYTT 369
           +K+PE   +W+  WT S +  +S A   V +  + T
Sbjct: 86  DKTPEKNSSWIDYWTPSQSPNVSRATTPVTSATFVT 121


>SB_25388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 57  EGGDKKKCDVIVIRNNNYEKQVLKSDVHNPYQLAID 164
           +  DKK CDV V+ N + +   L ++  N Y+ AID
Sbjct: 70  DDADKKNCDVSVLANTSPQLAEL-TERENMYKKAID 104


>SB_7182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 243 TKTNEYGEIAGITNGMANAVDSIDHKAYLGGQR 341
           T+T EYG  + +T G  N V +  H   L G +
Sbjct: 5   TRTGEYGPNSVVTAGCGNKVGTTKHVRSLSGAK 37


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
 Frame = +3

Query: 90  VIRN-NNYEKQVLKSDVHNP-YQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYG 263
           V+R+ NNY    +++ V    +  A+  + +    S +P V G TVL S+Y +   + Y 
Sbjct: 262 VVRDWNNYIAMRVETLVEQVLFTAALQMRANFSVVSGAPFVQGDTVLLSSYVSNHLSGYR 321

Query: 264 EIAG-ITNGMANAVDSIDHKAYLGGQ 338
            I G IT  +A+ +     ++ LG +
Sbjct: 322 AIDGTITWKLASFLSYKSSQSQLGSK 347


>SB_24918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 212 TVHFGR*TEKYCAGLVVDC*LV 147
           T+H GR    YC  L++ C L+
Sbjct: 61  TIHIGRNFFNYCVNLIIPCALI 82


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 6   LLLEMKYLIFVWLFVFAEGGDKKKCDVIVIRN 101
           L+L  + L+ V++ VFA+G +K + D+  +RN
Sbjct: 119 LMLIAQSLVSVFVAVFAKGDEKVRKDLYKLRN 150


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 320  FVVDTVHSVSHAICDSGDFSIFICF 246
            FVV ++H  S    D   FSIF+CF
Sbjct: 1010 FVVQSIHKFSTHRIDPIYFSIFMCF 1034


>SB_50171| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)
          Length = 335

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 320 FVVDTVHSVSHAICDSGDFSIFICF 246
           FVV ++H  S    D   FSIF+CF
Sbjct: 257 FVVQSIHKFSTHRIDPIYFSIFMCF 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,755,743
Number of Sequences: 59808
Number of extensions: 217404
Number of successful extensions: 609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)