Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E19
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.5  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   2.7  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   2.7  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 18 MKYLIFVWLFVFAEGG 65
          +KYL+F++ FVFA  G
Sbjct: 8  IKYLLFIFNFVFAVCG 23


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 16/83 (19%), Positives = 40/83 (48%)
 Frame = +2

Query: 98   EQQL*KTSSQERRAQSLPISNRLPDQHNIFQFISRSER*NCSKIRLLQYKNK*IWRNRRN 277
            +QQ  +   Q+++ Q L   N  PD HN++  +   ++  C    ++ + ++   + +  
Sbjct: 1451 QQQQQQQQQQQQQQQQL---NHYPDLHNLYA-VPTDKKSACDSKLIVDHSSQKTQQQQPQ 1506

Query: 278  HKWHG*RCGQYRPQSLSRRPKME 346
             +    +  Q +PQ  S++P+ +
Sbjct: 1507 QQQQ--QQQQQQPQQQSQQPQQQ 1527


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 348 NSIFGLRDKLCGRYCP 301
           N IF   D  C R+CP
Sbjct: 40  NEIFSRCDGRCQRFCP 55


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 348 NSIFGLRDKLCGRYCP 301
           N IF   D  C R+CP
Sbjct: 40  NEIFSRCDGRCQRFCP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,943
Number of Sequences: 438
Number of extensions: 2304
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)