Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E19
(372 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11620.1 68414.m01334 F-box family protein contains F-box dom... 31 0.32
At2g42480.1 68415.m05255 meprin and TRAF homology domain-contain... 29 1.3
At5g23970.1 68418.m02817 transferase family protein similar to ... 28 1.7
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 28 1.7
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ... 27 3.0
At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family prot... 27 4.0
At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive eff... 27 4.0
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70... 27 5.3
At4g27330.1 68417.m03921 sporocyteless (SPL) identical to sporoc... 26 7.0
At4g09560.1 68417.m01571 protease-associated zinc finger (C3HC4-... 26 9.2
At2g20300.1 68415.m02371 protein kinase family protein contains ... 26 9.2
>At1g11620.1 68414.m01334 F-box family protein contains F-box domain
Pfam:PF00646
Length = 363
Score = 30.7 bits (66), Expect = 0.32
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 364 CNRTCKLHLWPPR*ALWSILST 299
C+ TCKLHLW + WS L T
Sbjct: 269 CHETCKLHLWVMKKQHWSRLMT 290
>At2g42480.1 68415.m05255 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 743
Score = 28.7 bits (61), Expect = 1.3
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +3
Query: 15 EMKYLIFVWLFVFAEGGDKKKCDVIVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSL 194
E KYLI W +F G V I++NNY+ + V NP L ++ F +
Sbjct: 402 ERKYLI--WSPIFISGQCHWFVKVYPIKDNNYDHVSVYLHVANPQSLRPGWKRRAHFSLI 459
Query: 195 SPEVNGKTV 221
+GK V
Sbjct: 460 LSNQSGKEV 468
>At5g23970.1 68418.m02817 transferase family protein similar to
acetyl CoA: benzylalcohol acetyltransferase; BEAT
[Clarkia breweri][GI:3170250][PMID:9628024],
deacetylvindoline 4-O-acetyltransferase [Catharanthus
roseus][GI:4091808][PMID:9681034]
Length = 428
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 299 SVSHAICDSGDFSIFIC 249
SVSH ICD+ S F+C
Sbjct: 144 SVSHKICDAASLSTFVC 160
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 69 KKKCDVIVIRNNNYEKQVLKSDVHNPY 149
KK D +R NY KQ L +++ PY
Sbjct: 654 KKILDAPTVRQRNYTKQYLPGEMYGPY 680
>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 238
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 186 FSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNGMANAVDSIDHKAYLGGQRWSLHVRLH 365
FSL+ G + S+ T G G + + V SI HK++ GQ H R H
Sbjct: 115 FSLTQSAGGDELSTSSAITTS----GISGGGGGSVKSHVCSICHKSFATGQALGGHKRCH 170
Query: 366 YQ 371
Y+
Sbjct: 171 YE 172
>At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family protein
similar to family II lipases EXL3 GI:15054386, EXL1
GI:15054382, EXL2 GI:15054384 from [Arabidopsis
thaliana]; contains Pfam profile: PF00657 Lipase
Acylhydrolase with GDSL-like motif
Length = 353
Score = 27.1 bits (57), Expect = 4.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +3
Query: 150 QLAIDYQTSTIFFS------LSPEVNGKTVLKSAYFNTKTNEYGEIAGITN 284
+LA D T+ F+ LSPE +GK +L A F + + Y + A + N
Sbjct: 75 KLATDITAETLGFTKYPPAYLSPEASGKNLLIGANFASAASGYDDKAALLN 125
>At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1050
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 9 LLEMKYLIFVWLFVFA--EGGDKKKCDVIVIRNNNYEKQVLKSDVHNPY 149
LL M+Y + + +F E D K D +R +YEK+ L ++ PY
Sbjct: 621 LLNMQYRMHPSISIFPNREFYDMKILDAPSVRLRSYEKKFLPEKMYGPY 669
>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein
GI:425194 [Spinacia oleracea]
Length = 650
Score = 26.6 bits (56), Expect = 5.3
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +3
Query: 39 WLFVFAEGGDKKKCDVIVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKT 218
W F G +K +IV+ + EKQ ++ + + I + F SP V
Sbjct: 93 WPFKVVSGPGEKP--MIVVNHKGEEKQFSAEEISS--MVLIKMREIAEAFLGSP-VKNAV 147
Query: 219 VLKSAYFNTKTNEYGEIAGITNGM 290
V AYFN + + AG+ +G+
Sbjct: 148 VTVPAYFNDSQRQATKDAGVISGL 171
>At4g27330.1 68417.m03921 sporocyteless (SPL) identical to
sporocyteless SPL (MADS-box related protein)
[Arabidopsis thaliana] gi|5566240|gb|AAD45344
Length = 314
Score = 26.2 bits (55), Expect = 7.0
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 48 VFAEGGDKKKCDVIVIRNNNYEKQVLKSDVHNPYQ-LAIDYQTSTIFFSLSPEVNGKTVL 224
V + GG K +I N Y++ +L+SD H Q D++ + + V+ +
Sbjct: 189 VRSNGGGFSKYTMIPPPMNGYDQYLLQSDHHQRSQGFLYDHR-----IARAASVSASSTT 243
Query: 225 KSAYFNTKTNEYG 263
+ YFN TN G
Sbjct: 244 INPYFNEATNHTG 256
>At4g09560.1 68417.m01571 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326
Length = 431
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 323 SFVVDTVHSVSHAICDSGDFSIFICFCIE 237
S ++ ++ + ICD SI C C+E
Sbjct: 194 SMIIRMPTTIFNGICDEATTSILCCICLE 222
>At2g20300.1 68415.m02371 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 744
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 372 LGSVIVRVNSIFGLRDKLCGRYCPQR 295
+G V+ + I+ D+ CG YC Q+
Sbjct: 609 MGEVVQALKLIYNDADETCGDYCSQK 634
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,204,609
Number of Sequences: 28952
Number of extensions: 154827
Number of successful extensions: 372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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