Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E18
(218 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 25 1.4
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 24 2.4
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 24 2.4
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 24 3.1
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 23 4.1
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 23 5.5
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 23 7.2
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 23 7.2
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 22 9.6
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 22 9.6
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 22 9.6
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 22 9.6
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 1.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -2
Query: 217 FISSMIEGSIGWSPLVGAG 161
F+ G +GW P++G+G
Sbjct: 371 FVIRAFGGKVGWDPILGSG 389
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 73 DLLRRGPSVFEDYGKL 120
DLL GPS+FE+ KL
Sbjct: 641 DLLTYGPSIFEELRKL 656
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 8 TDCVNDALGREFLSALHTTNIQTSSDEAHQYSKI 109
T C REFLS + TT+++T + ++I
Sbjct: 229 TKCKRVLRWREFLSTVFTTSLETDERDFESENRI 262
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 215 YIVND*RQYWMVTTRWRR*NVIALVQPQWFISSF 114
Y ND + W +T+ WR + +L++ W SF
Sbjct: 41 YDFNDDTETWAITSEWRAGDA-SLMRVAWAHPSF 73
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 71 QTSSDEAHQYSK 106
Q SSDE H+YSK
Sbjct: 51 QASSDELHKYSK 62
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 135 RLYKGNDISPAPTSGDHPILPS 200
+ Y ++PAPT+ HP + S
Sbjct: 544 KAYTSQQLNPAPTAMPHPNITS 565
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +2
Query: 20 NDALGREFLSALHTTNIQTSSDEAHQYSK 106
N LG A H T ++T E H+ ++
Sbjct: 353 NQPLGANEKDAAHITELETKLKELHEQNR 381
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 34 KRVLVSASYYQHTDLLRRGPSVFEDYGKLEMN 129
KR + S + + R S+FEDY +L +N
Sbjct: 386 KRFPDATSPFSGESMFREYSSIFEDYHQLLVN 417
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 217 FISSMIEGSIGWSPLVGAGEMSLPL 143
F+ I G I W+PL LPL
Sbjct: 179 FLCGYIAGPIVWAPLSELSGRKLPL 203
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 193 SIGWSPLVGAG 161
SIGW+ L GAG
Sbjct: 319 SIGWTKLTGAG 329
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 120 GDEPLRLYKGNDISP 164
GDEPL L +G ISP
Sbjct: 366 GDEPLPLKQGYFISP 380
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 51 ADKNSLPRASLTQS 10
+DKN LP+AS +QS
Sbjct: 23 SDKNHLPKASPSQS 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,564
Number of Sequences: 5004
Number of extensions: 13285
Number of successful extensions: 31
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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