Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E18
(218 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0587 + 22555414-22557231 27 2.1
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 2.7
11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671,812... 26 3.6
04_04_1372 + 33008740-33009130,33009485-33011544 26 3.6
12_01_1091 + 11349034-11349438,11350581-11350748,11351189-113515... 25 6.3
06_02_0343 + 14812316-14812586,14812749-14812825 25 8.3
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 25 8.3
01_04_0099 + 16005874-16006257 25 8.3
>06_03_0587 + 22555414-22557231
Length = 605
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -2
Query: 214 ISSMIEGSIGWSPLVGAGEMSLPLYNLSGSSPAS 113
+S I G+IG LV E+ L NLSGS PAS
Sbjct: 550 LSGQIPGTIG--NLVQLNELRLDENNLSGSIPAS 581
>03_05_0697 +
26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 190 IGWSPLVGAGEMSLPLYNLSG 128
I W+ V A EMS+ LYNL+G
Sbjct: 450 IMWTCTVSAPEMSVMLYNLNG 470
>11_02_0083 -
8116997-8117590,8118342-8118745,8119073-8119671,
8120226-8120266
Length = 545
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 201 LKAVLDGHHSLAQVKCHCPCT 139
L AV +GH SLA + C CT
Sbjct: 100 LTAVTNGHMSLASILLECCCT 120
>04_04_1372 + 33008740-33009130,33009485-33011544
Length = 816
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -2
Query: 211 SSMIEGSIG--WSPLVGAGEMSLPLYNLSGSSPAS 113
++ + GS+G W P + +SLP+ +SG PA+
Sbjct: 298 NNSLTGSLGPIWYPQMNLQAISLPMNRISGHLPAN 332
>12_01_1091 +
11349034-11349438,11350581-11350748,11351189-11351500,
11351995-11352063,11352177-11352269,11352642-11352844,
11354783-11355056,11355561-11355606,11355646-11355806
Length = 576
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 59 TTNIQTSSDEAHQYSKITGSWR 124
T + QTS D+A+ Y+++ W+
Sbjct: 256 TWDFQTSGDQANSYAQLVTEWK 277
>06_02_0343 + 14812316-14812586,14812749-14812825
Length = 115
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 117 AGDEPLRLYKGNDISPAPTSGDHPILPSIIDDIK 218
AG P + GN+ S +P LPSI +D++
Sbjct: 57 AGGTPASDWMGNERGKGVLSMANPFLPSISEDLQ 90
>01_05_0117 -
18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 34 KRVLVSASYYQHTDLLRRGPSVF 102
KR LV A + + LLRR PSV+
Sbjct: 767 KRKLVKAIFSREFRLLRRNPSVY 789
>01_04_0099 + 16005874-16006257
Length = 127
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 117 AGDEPLRLYKGNDISPAPTSGDHPILPSIIDDIK 218
AGD P KG + ++P +PSI +D++
Sbjct: 57 AGDVPAMDLKGKERGKGVLGMENPFVPSISEDLQ 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,656,055
Number of Sequences: 37544
Number of extensions: 90335
Number of successful extensions: 251
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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