Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E18
         (218 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.80 
SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                27   2.4  
SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   26   4.2  
SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_11295| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 25   7.4  
SB_11783| Best HMM Match : C4 (HMM E-Value=1)                          25   7.4  
SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_39668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 8   TDCVNDALGREFLSALHTTNIQTSSDEAHQYSKITGSWR 124
           T+   D    E   + HTTN  +SSDE     +  G W+
Sbjct: 16  TETFEDYSDSESSQSDHTTNEDSSSDETESMDRFHGHWK 54


>SB_45775| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 584

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 100 FEDYGKLEMNH*GCTRAMTFHLRQRVVTIQYCLQSLT 210
           F+   K ++   GCTR   +   QR++ I  CL  +T
Sbjct: 8   FDSGIKFQITEYGCTRESVYSNTQRLMGITKCLMGIT 44


>SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 23  DALGREFLSALHTTNIQTSSDEAHQY-SKITGSW 121
           D + +  L+ LH T +   S + HQY SK   SW
Sbjct: 452 DQMSQAILAVLHHTVLSDDSKKRHQYCSKGNNSW 485


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 20   NDALGREFLSALHT-TNIQTSSDEAHQYSKITGS 118
            N A  R+  ++LH  TN+ TS D+ H Y +  GS
Sbjct: 1552 NIAQKRDSRASLHGYTNMGTSGDDGHGYIRSAGS 1585


>SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 193 SIGWSPLVGAGEMSLPLYN 137
           S+ WS L GA  +SLPLYN
Sbjct: 79  SLAWSDL-GASVLSLPLYN 96


>SB_11295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 29  LGREFLSALHTTNIQTSSDEAHQYSKITGSW 121
           L REF+  LH +N++  +D    +  + G++
Sbjct: 26  LAREFVQVLHVSNVRNGTDSWSMFGFLYGTF 56


>SB_56842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 174 SLAQVKCHCPCTTSVVHLQL 115
           SL +V+  CPC  SV+H+++
Sbjct: 67  SLLRVRVVCPCCMSVLHVRV 86


>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = -1

Query: 194  QYWMVTTRW----RR*NVIALVQPQWFISSFP*SSNTDGPRRRRSVCW*YEALTRTLFQE 27
            QYW+  TR     RR  + +L+ P++F++    +S     RRR++  +   +LTRT F+E
Sbjct: 1377 QYWLKVTRKSQEARRFYLDSLL-PKFFVTWHAYASERS-TRRRQATSFRDSSLTRTAFKE 1434


>SB_11783| Best HMM Match : C4 (HMM E-Value=1)
          Length = 565

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = -1

Query: 194 QYWMVTTRW----RR*NVIALVQPQWFISSFP*SSNTDGPRRRRSVCW*YEALTRTLFQE 27
           QYW+  TR     RR  + +L+ P++F++    +S     RRR++  +   +LTRT F+E
Sbjct: 26  QYWLKVTRKSQEARRFYLDSLL-PKFFVTWHAYASERS-TRRRQATSFRDSSLTRTAFKE 83


>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 23  DALGREFLSALHTTNIQTSSDEAHQY-SKITGSW 121
           D + +  L+ LH T +   S + HQY  K   SW
Sbjct: 503 DQMSQAILAVLHHTVLSDDSKKRHQYCPKGNNSW 536


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,439,753
Number of Sequences: 59808
Number of extensions: 106070
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 16,821,457
effective HSP length: 50
effective length of database: 13,831,057
effective search space used: 304283254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)