Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E18
         (218 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67310.1 68414.m07661 calmodulin-binding protein similar to a...    27   1.7  
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro...    26   3.9  
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro...    26   3.9  
At5g17100.1 68418.m02003 hypothetical protein                          25   5.2  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    25   5.2  
At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa...    25   6.8  
At5g17110.1 68418.m02004 hypothetical protein                          25   6.8  
At2g31260.1 68415.m03817 autophagy 9 (APG9) identical to autopha...    25   6.8  

>At1g67310.1 68414.m07661 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from[Nicotiana tabacum]
          Length = 1035

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 199 EGSIGWSPLVGAGEMSLPLYNLSGSSPAS 113
           +GS  W  ++ A E S+PL N  GS+P+S
Sbjct: 358 QGSESWKDVLEACEASIPL-NSEGSTPSS 385


>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
           chloroplast, putative strong similarity to SP|P29102
           3-isopropylmalate dehydrogenase, chloroplast precursor
           {Brassica napus}
          Length = 409

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 211 SSMIEGSIGWSPLVGAGEMSLPLYN-LSGSSP 119
           +SMI GSIG  P    GE    L+  + GS+P
Sbjct: 298 ASMITGSIGMLPSASLGESGPGLFEPIHGSAP 329


>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
           chloroplast, putative strong similarity to SP|P29102
           3-isopropylmalate dehydrogenase, chloroplast precursor
           {Brassica napus}; EST gb|F14478 comes from this gene
          Length = 404

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 211 SSMIEGSIGWSPLVGAGEMSLPLYN-LSGSSP 119
           +SMI GSIG  P    GE    L+  + GS+P
Sbjct: 295 ASMITGSIGMLPSASLGESGPGLFEPIHGSAP 326


>At5g17100.1 68418.m02003 hypothetical protein
          Length = 239

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 176 TRWRR*NVIALVQPQWFISSFP*SSNTDGPRRRR 75
           + W   NV+A  +P+W + SF        PR R+
Sbjct: 45  SEWAGYNVLAETEPEWDVDSFDGHEFKINPRVRK 78


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
           Pfam PF04054: CCR4-Not complex component, Not1; contains
           TIGRFAM TIGR01612: reticulocyte binding protein; similar
           to General negative regulator of transcription subunit 1
           (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
           gb|T44328 and gb|AA395265
          Length = 2378

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 129 PLRLYKGNDISPAPTSGDHPILPSI 203
           PL+L + N++   P++   P+LPS+
Sbjct: 860 PLQLQQKNEVPSVPSNEAKPLLPSL 884


>At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 308

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 147 PCTTSVVHLQLPVIFEY*WASSEEVCML 64
           PC    +H   P+ FE+ + S  +V +L
Sbjct: 189 PCVEGAMHHDCPICFEFLFESRNDVTVL 216


>At5g17110.1 68418.m02004 hypothetical protein
          Length = 208

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 176 TRWRR*NVIALVQPQWFISSFP*SSNTDGPRRRR 75
           + W   NV+A  +P+W + SF        PR R+
Sbjct: 44  SEWAGYNVLAETEPEWDVDSFDGHEFKINPRVRQ 77


>At2g31260.1 68415.m03817 autophagy 9 (APG9) identical to autophagy
           9 protein GI:19912149 from [Arabidopsis thaliana]
          Length = 866

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 20  NDALGREFLSALHTTNIQTSSDEAHQYSKITGSWR*TT 133
           +D+LG++FLS L T   +   +   ++S  + +WR +T
Sbjct: 602 SDSLGKQFLSNLRTFRDRKLHEINTRHSSPSRAWREST 639


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,435,747
Number of Sequences: 28952
Number of extensions: 68923
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 12,070,560
effective HSP length: 52
effective length of database: 10,565,056
effective search space used: 211301120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)