Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E17
(523 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15530.1 68418.m01818 biotin carboxyl carrier protein 2 (BCCP... 32 0.27
At1g61010.2 68414.m06870 cleavage and polyadenylation specificit... 31 0.36
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit... 31 0.36
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin... 31 0.62
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 30 0.82
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 1.4
At1g05040.1 68414.m00505 hypothetical protein 29 1.4
At2g32260.1 68415.m03943 cholinephosphate cytidylyltransferase, ... 29 1.9
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 29 1.9
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 29 2.5
At3g24550.1 68416.m03083 protein kinase family protein contains ... 29 2.5
At2g16440.1 68415.m01883 DNA replication licensing factor, putat... 29 2.5
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family... 29 2.5
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 28 3.3
At2g44790.1 68415.m05574 uclacyanin II strong similarity to ucla... 28 3.3
At1g58220.1 68414.m06612 myb family transcription factor contain... 28 3.3
At1g05800.1 68414.m00606 lipase class 3 family protein similar t... 28 3.3
At5g28350.1 68418.m03442 expressed protein 28 4.4
At3g59000.1 68416.m06576 F-box family protein contains F-box dom... 28 4.4
At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger) fa... 28 4.4
At4g18570.1 68417.m02749 proline-rich family protein common fami... 27 5.8
At2g34190.1 68415.m04184 xanthine/uracil permease family protein... 27 5.8
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat... 27 5.8
At1g54350.1 68414.m06196 ABC transporter family protein similar ... 27 5.8
At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid t... 27 7.7
At3g23540.1 68416.m02962 expressed protein ; expression supporte... 27 7.7
At3g08760.1 68416.m01018 protein kinase family protein contains ... 27 7.7
At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP... 27 7.7
At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /... 27 7.7
At1g49290.1 68414.m05525 expressed protein ; expression supporte... 27 7.7
>At5g15530.1 68418.m01818 biotin carboxyl carrier protein 2 (BCCP2)
identical to biotin carboxyl carrier protein isoform 2
[Arabidopsis thaliana] gi|8886869|gb|AAF80592
Length = 255
Score = 31.9 bits (69), Expect = 0.27
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 209 ALRPSSPPTSTWREL-PSSTRTESWSPLSPPSAGTITLSP----PSRAKAATSQQRG 364
AL PS PTST P+S + S PL P AGT SP P K Q+G
Sbjct: 154 ALPPSPTPTSTPATAKPTSAPSSSHPPLKSPMAGTFYRSPGPGEPPFVKVGDKVQKG 210
>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 31.5 bits (68), Expect = 0.36
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Frame = -2
Query: 510 LVQYGSARVLRV-DQSRGQTLYVLADLLPACKRPVSVY--CDSVRVFY--HFPWPRCCEV 346
+V R+L D SR + ++ A LP + + V++ H R +V
Sbjct: 176 MVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDV 235
Query: 345 AAFALEGGDSVMVPALGGDNGDQLSVLVDDGSSRHVDVGGLEGRSASPLRQVTVTRDQQY 166
+ G V++PA +L +++D+ + H D+ + ASPL + + Q Y
Sbjct: 236 IHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTY 295
Query: 165 ALAAVDK 145
L+ D+
Sbjct: 296 ILSMNDR 302
>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 31.5 bits (68), Expect = 0.36
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Frame = -2
Query: 510 LVQYGSARVLRV-DQSRGQTLYVLADLLPACKRPVSVY--CDSVRVFY--HFPWPRCCEV 346
+V R+L D SR + ++ A LP + + V++ H R +V
Sbjct: 176 MVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDV 235
Query: 345 AAFALEGGDSVMVPALGGDNGDQLSVLVDDGSSRHVDVGGLEGRSASPLRQVTVTRDQQY 166
+ G V++PA +L +++D+ + H D+ + ASPL + + Q Y
Sbjct: 236 IHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTY 295
Query: 165 ALAAVDK 145
L+ D+
Sbjct: 296 ILSMNDR 302
>At1g08420.1 68414.m00931 kelch repeat-containing protein /
serine/threonine phosphoesterase family protein contains
Pfam profiles: PF00149 calcineurin-like phosphoesterase,
PF01344 kelch motif
Length = 1018
Score = 30.7 bits (66), Expect = 0.62
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 197 RSGDALRPSSPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPPSRAKAATSQQR 361
R +L P+ RE P +S PP G++ PPS ATSQQ+
Sbjct: 15 REFQSLDGGQSPSPMERETPQQMNDQS----PPPEGGSVPTPPPSDPNPATSQQQ 65
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 30.3 bits (65), Expect = 0.82
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 221 SSPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPPSRAKAATS 352
S P T + R SS+ + S +P +PPS+ T T S SR+ AA +
Sbjct: 30 SGPTTRSKRARLSSSSSSSLAP-TPPSSSTTTRSRSSRSAAAAA 72
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 212 LRPSSPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPP 328
+ P++PP + P+S T S P+SPP A T SPP
Sbjct: 91 ISPATPPPQPPQSPPASAPTVSPPPVSPPPAPT---SPP 126
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 209 ALRPSSPPTSTWRELPSSTRTESWSPLSPP-SAGTITLSPPSRAKAATS 352
A+ P+SPP + S P SPP SA T++ P S A TS
Sbjct: 76 AVTPTSPPAPKVAPVISPATPPPQPPQSPPASAPTVSPPPVSPPPAPTS 124
>At1g05040.1 68414.m00505 hypothetical protein
Length = 166
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 357 CCEVAAFALEGGDSVMVPALGGDNGDQLSVLVDDGSSRHVDVGGLEGRSASPLRQ 193
C + A + LEG D + A+ G GDQL L + R V+ RS SPLR+
Sbjct: 18 CKDAAFYYLEGFDWNLEDAISGFLGDQLPPLKIRATPRRVN--EWRERSRSPLRR 70
>At2g32260.1 68415.m03943 cholinephosphate cytidylyltransferase,
putative / phosphorylcholine transferase, putative /
CTP:phosphocholine cytidylyltransferase, putative strong
similarity to CTP:phosphocholine cytidylyltransferase
[Brassica napus] GI:1418125; contains Pfam profile
PF01467: Cytidylyltransferase
Length = 332
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 429 PACKRPVSVYCDSVRVFYHFPWPRCCEVAAFALEGGDSVMV 307
P RPV VY D + +HF R E A A ++V
Sbjct: 29 PPTDRPVRVYADGIYDLFHFGHARSLEQAKLAFPNNTYLLV 69
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 209 ALRPSSPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPPS 331
+L PSSPP P S+ + S SP SPPS+ + +PPS
Sbjct: 62 SLSPSSPPPPPPSSSPLSSLSPSLSP-SPPSSSP-SSAPPS 100
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +2
Query: 200 SGDALRPSSPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPP 328
S +L PS PP+S+ PSS S SP SPP SPP
Sbjct: 32 SSPSLSPS-PPSSS----PSSAPPSSLSPSSPPPLSLSPSSPP 69
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 224 SPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPP 328
SPP+S+ PSS S SP SPP SPP
Sbjct: 88 SPPSSS----PSSAPPSSLSPSSPPPLSLSPSSPP 118
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 197 RSGDALRPSSPPTSTWRELPSSTRT----ESWSPLSPPSAGTITLSPPSR 334
RSG +RPS+ PT +P T T S S SP + +L+P SR
Sbjct: 115 RSGSTIRPSNIPTIRSSSVPKKTTTTQIQASASVSSPKRTVSRSLTPSSR 164
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 218 PSSPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPPSRAKAAT 349
P SP T++ PSS S P SPP + T L PS + T
Sbjct: 44 PPSPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPLPQPSPSAPIT 87
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 254 PSSTRTESWSPLSPPSAGTITLSPPS 331
PS T S SP SPP+ T T PP+
Sbjct: 5 PSPGTTPSPSPPSPPTNSTTTTPPPA 30
>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
similar to SP|P49717 DNA replication licensing factor
MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
protein {Schizosaccharomyces pombe}; contains Pfam
profile PF00493: MCM2/3/5 family
Length = 847
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 257 SSTRTESWSPLSPPS--AGTITLSPPSRAKAATSQQR-GHG 370
SST T+ +P PPS A + + P SR AA S+ R GHG
Sbjct: 43 SSTPTQFATPPPPPSRLASSNSTPPTSRPSAARSKGRNGHG 83
>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
protein
Length = 558
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +2
Query: 218 PSSPPTSTWRELPSST---RTESWSPLSPPSAGTITLSPPSR--AKAATSQQ 358
P +PP + P+S+ R E+ SP +PP+ PP R AKAA +Q+
Sbjct: 230 PPTPPLPKFLVSPASSLGKRDENSSPFAPPTPPPPPPPPPPRPLAKAARAQK 281
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +2
Query: 146 LSTAASAYC*SLVTVTWRSGDALRPSSPPTSTWRE----LPSSTRTES-WSP-LSPPSAG 307
++ ++ A C L VT + D PSSPP E LPS T + P LSPP
Sbjct: 3 ITRSSLAICLILSLVTITTADYYSPSSPPVYKSPEHKPTLPSPVYTPPVYKPTLSPPVYT 62
Query: 308 TITLSPP 328
T+ PP
Sbjct: 63 KPTIPPP 69
>At2g44790.1 68415.m05574 uclacyanin II strong similarity to
uclacyanin II GI:3399769 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin II GI:3399768
Length = 202
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 254 PSSTRTESWSPLSPPSAGTITLSPPSRAKAATS 352
PSST +P SPPS G+ T + P+ +TS
Sbjct: 138 PSSTPGTPTTPESPPSGGSPTPTTPTPGAGSTS 170
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 218 PSSPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPPSRAKAAT 349
PSSP T P S + S PPS + L P RA AAT
Sbjct: 612 PSSPFTKPLHMAPLSKGSTIQSNSVPPSFASSRLVPTQRAPAAT 655
>At1g05800.1 68414.m00606 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 471
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 224 SPPTSTWRELPSSTRTE--SWSPLSPPSAGTITLSPPSRAKAAT 349
S TS + SST + S SPLS PS+ + PPSRA A T
Sbjct: 34 SQHTSKRLVVSSSTMSPPISSSPLSLPSSSSSQAIPPSRAPAVT 77
>At5g28350.1 68418.m03442 expressed protein
Length = 1127
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 142 VFINRSKRILLISSDGHLAQWRCAPTFESANVYMAGTPIVNKDGELVTIVTAKRGNHYAV 321
V++ + R+LL+ S HL W + YM V ++GE + V + AV
Sbjct: 25 VYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRDDKSVREEGENLQAVWSPDAKLIAV 84
Query: 322 ST 327
T
Sbjct: 85 LT 86
>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
Pfam:PF00646
Length = 491
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 58 YCDVFTEQLMA--PLGELAYVRIDENTAEKVFINRSKRILLISSDGHL 195
Y D F L+A L EL V ++ ++ N S + L I SDGHL
Sbjct: 175 YVDKFETLLLALPALEELVLVDVNWLDSDVTISNASLKTLTIDSDGHL 222
>At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 143 CLSTAASAYC*SLVTVTWRSGDALRPSSPP 232
C S + +C + + + WR G LRP P
Sbjct: 21 CQSNCSHWFCGNCIMLVWRHGSTLRPCKCP 50
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 224 SPPTSTWRELPSSTRTESWSP--LSPPSAGTITLSPP 328
SP T +++PS P L PPS+G+ T PP
Sbjct: 15 SPSTKKTKDMPSPLPLPPPPPPPLKPPSSGSATTKPP 51
>At2g34190.1 68415.m04184 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 524
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = -2
Query: 318 SVMVPALGGDNGDQLSVL 265
S++VP +GGD+GD++ V+
Sbjct: 53 SILVPMMGGDDGDKVRVV 70
>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
similar to CLIP-associating protein CLASP2 (GI:13508651)
[Rattus norvegicus]
Length = 1439
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 453 LYVLADLLPACKRPVSVYCDSV 388
L LADL+P+C++P Y + V
Sbjct: 857 LSTLADLIPSCRKPFESYMERV 878
>At1g54350.1 68414.m06196 ABC transporter family protein similar to
hypothetical ABC transporter ATP-binding protein
GI:9955395 from [Microcystis aeruginosa]
Length = 706
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -3
Query: 428 RLVNDLSPYTATVLGFSTT 372
RLV+DLS +T T L FS T
Sbjct: 189 RLVDDLSSFTGTALSFSLT 207
>At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 208
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 224 SPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPPS 331
SP TS PSS T S + SP S+GT LS P+
Sbjct: 156 SPETSATS--PSSDETPSMTAPSPSSSGTNILSVPA 189
>At3g23540.1 68416.m02962 expressed protein ; expression supported
by MPSS
Length = 568
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 221 SSPPTSTWRELPSSTRTESWSPLSPPSAGTITLSPPSRAKAATSQ 355
SSP T + +LPSS+ + S S A T+T S P S+
Sbjct: 484 SSPVTRSQDQLPSSSESNPPSETSSSLARTVTSSVPGSLSQKESE 528
>At3g08760.1 68416.m01018 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 557
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 257 SSTRTESWSPLSPPSAGTITLSPPSRAKAATSQQRG 364
SS T W+P S P + + SPP R + + S RG
Sbjct: 482 SSLNTIIWTPASVPPRSSFSPSPPPR-RPSVSPTRG 516
>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
TBP-interacting protein TIP120 GI:1799570 from [Rattus
norvegicus]
Length = 1219
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 510 LVQYGSARVLRVDQSRGQTLYVLADLLPACKRPVSVYCDSV 388
L+ Y ++ ++ R +L L L C R +S YCD +
Sbjct: 257 LINYCTSASENDEELREYSLQALESFLLRCPRDISPYCDEI 297
>At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
GI:807956 from [Saccharomyces cerevisiae]similar to
polyphosphoinositide binding protein Ssh2p (GI:2739046)
{Glycine max}; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 490
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +2
Query: 176 SLVTVTWRSGDALRPSSPPTSTWRELPSSTRT-ESWSPLSPPSAGTITLSPPSRAKA 343
+LVT +L PS ST LP+ T T E + +PP T P A
Sbjct: 9 TLVTPEKLPSPSLTPSEVSESTQDALPTETETLEKVTETNPPETADTTTKPEEETAA 65
>At1g49290.1 68414.m05525 expressed protein ; expression supported
by MPSS
Length = 338
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 207 SPLRQVTVTRDQQYALAAVDKHLFCSVLVN 118
+PL + VTRD+ A +D+ LF ++ N
Sbjct: 12 NPLSSIVVTRDEFNAFHTIDRTLFSRLVFN 41
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,168
Number of Sequences: 28952
Number of extensions: 269286
Number of successful extensions: 1085
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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