Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E15
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM...    29   1.4  
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo...    29   1.8  
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    28   2.4  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    28   3.1  
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ...    27   4.1  
At1g71320.1 68414.m08232 S locus F-box-related / SLF-related con...    27   4.1  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    27   4.1  
At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containi...    27   5.5  
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family...    27   7.2  
At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1...    27   7.2  
At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    27   7.2  
At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2) id...    26   9.5  
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila...    26   9.5  

>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
           identical to SP|Q42510; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1451

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +3

Query: 66  GVQSRYLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKN 245
           GV S Y IVS+PV       E ++  S  +   A GA +L  DG  G G + P +  D +
Sbjct: 249 GVDSDYAIVSKPVEDGNANSEYDVENS--MATFATGAQSLMDDGPVGPGSRKPASPYDLH 306

Query: 246 IVS 254
           I++
Sbjct: 307 IMT 309


>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
           identical to DegP protease precursor GB:AF028842 from
           [Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
           7094-7098 (1998))
          Length = 439

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = -2

Query: 364 MCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSEL 185
           +C SV L+   F+L +A+PAV + S   +V + + +      ++      TP+    + L
Sbjct: 83  LCTSVALS---FSLFAASPAVESAS-AFVVSTPKKLQTDELATVRLFQENTPSVVYITNL 138

Query: 184 SVRAPCASLRTLELVNSSGS 125
           +VR    +L  LE+   SGS
Sbjct: 139 AVRQDAFTLDVLEVPQGSGS 158


>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 391 AVTLSPNPGMCVSVRLTPWPFTLSSAT--PAVAAPSFCLLVKS 269
           +++ S NPG+C      P P   S AT  P  + P+   + KS
Sbjct: 268 SISFSGNPGLCGGPTRNPCPIPSSPATVSPPTSTPALAAIPKS 310


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 400  LPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK 266
            L A+  LS   G+C    LTP+  T +    A+  P    L+K +
Sbjct: 1804 LQASQALSRLTGLCADESLTPYNATAADVLKALLTPKLASLLKDE 1848


>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 456

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 394 AAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK--EPIALT 248
           ++++ SP+P     + + P+P +L +  P+ ++     L+ S   EPI  T
Sbjct: 366 SSLSYSPSPSSLTDMPVAPYPSSLGTLAPSSSSDQCTELISSSSIEPITTT 416


>At1g71320.1 68414.m08232 S locus F-box-related / SLF-related
           contains F-box domain Pfam:PF00646; contains TIGRFAM
           TIGR01640: F-box protein interaction domain; similar to
           S locus F-box (SLF)-S2-like protein (GI:13161528)
           [Antirrhinum hispanicum]
          Length = 392

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 364 MCVSVRLTPWPFTLSSATPAVA 299
           M +S     WPFTLS  TPA+A
Sbjct: 144 MKLSPEFMQWPFTLSYLTPAMA 165


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 403 TLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPS 290
           +LP    +  N  +  S  LTP  FT ++A PA   P+
Sbjct: 342 SLPPGQYMPGNAALSASTPLTPGQFTTANAPPAPPGPA 379


>At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 593

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 270 DLTNRQKLGAATAGVALDNVNGHGVSLT 353
           +L N  + G  TAGV   N NG+GV  T
Sbjct: 180 NLGNLNQTGPVTAGVNYGNNNGYGVKRT 207


>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
           protein
          Length = 513

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
 Frame = -2

Query: 385 TLSPNPGMCVSVRLTPWPFTLSS--ATPAVAAPSFCLLVKSKEPIALTIFLSLPAK---- 224
           T +P+ G   S   TP     SS  ATP+  AP+  L   S  P    +F S PA     
Sbjct: 409 TSNPSSGAGFSFLNTPASGPSSSLFATPSSTAPTSSLFGPSPTPTQTPLFGSSPASTFGS 468

Query: 223 -----GTLTPAPEVPSELSVRAP 170
                G  TP+  +PS+     P
Sbjct: 469 TQSLFGQTTPSLTMPSQFGGATP 491


>At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 422

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -3

Query: 165 RPCGL*SLSIVQAPHSVEYSKQVR*QSGIGFERRRTERQAIKRRSSRT 22
           R  G  S  ++ +P+  E   Q+  ++  G +RRR +R+  +R++SRT
Sbjct: 204 RSSGDESDDLISSPNFSEMYTQLANKTSPGGDRRRQKRKEKERQASRT 251


>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 419 VVEEIHFAGSCHLVSEPGDV 360
           VVE IH    CH+V  P DV
Sbjct: 293 VVETIHRDNICHIVKAPADV 312


>At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2)
           identical to serine palmitoyltransferase [Arabidopsis
           thaliana] GI:9309380; similar to serine
           palmitoyltransferase from Solanum tuberosum
           [GI:4995890], Homo sapiens [SP|O15270], Mus musculus
           [SP|P97363]; contains Pfam profile PF00155:
           aminotransferase, classes I and II
          Length = 489

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 428 VVIVVEEIH-FAGS-CHLVSEPGDVCIRETYSVAVYIIQCHSSG 303
           +++VVE I+   G  CHL   P  V I + Y   VY+ + HS G
Sbjct: 242 IIVVVEGIYSMEGEICHL---PEVVAICKKYKAYVYLDEAHSIG 282


>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
           to S-receptor kinase gi|392557|gb|AAA62232; contains
           Pfam domains PF00954: S-locus glycoprotein family,
           PF00069: Protein kinase domain and PF01453: Lectin
           (probable mannose binding)
          Length = 772

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 81  YLIVSEPVYYIQHYEEPELLTSSRVRRDAHGAL 179
           Y+   E VYY    E P +LT  R++ + +GAL
Sbjct: 227 YVFTEEEVYYTYKLENPSVLT--RMQLNPNGAL 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,271,310
Number of Sequences: 28952
Number of extensions: 177666
Number of successful extensions: 581
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)