Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E13
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   1.6  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    26   3.8  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.8  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +2

Query: 305 HVTCNQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQHGLPDISDC*EKALNFIKQLL 484
           HV  N +      V    A+K Y +H  ++W     + +  LP +SD  E   N+ ++++
Sbjct: 136 HVHKNDINRFGTKVYEELARK-YPQHSLESWRQHYKYMKKRLPPVSDSDES--NYCQRII 192

Query: 485 MKFTSSSCNLKQ 520
           +K  SS  +  Q
Sbjct: 193 VKPYSSQKDYTQ 204


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 593 FANCFLMIFVFLNISIMH 540
           F NCF ++F+FL  S +H
Sbjct: 6   FLNCFFLVFLFLFFSDVH 23


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 584 CFLMIFVFLNISIMHNILI 528
           C+L++F FL ISI   +LI
Sbjct: 8   CYLLLFCFLPISISSAVLI 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,781
Number of Sequences: 5004
Number of extensions: 48883
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)