Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E11
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 1.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 1.1
Z81463-2|CAB03851.1| 342|Caenorhabditis elegans Hypothetical pr... 28 3.4
U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of c... 28 3.4
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 28 3.4
AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrat... 28 3.4
AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical ... 28 4.5
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr... 27 5.9
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr... 27 5.9
U70854-5|AAB09157.1| 589|Caenorhabditis elegans Dnaj domain (pr... 27 5.9
U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein ... 27 5.9
AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 prote... 27 5.9
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr... 27 7.8
U13644-1|AAB52683.1| 437|Caenorhabditis elegans Hypothetical pr... 27 7.8
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 204 PRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 380
P +P+ G PV PS T + S ++P+ Y S + S +S S PT P Y+
Sbjct: 1598 PTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYS 1655
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +3
Query: 204 PRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 380
P +P+ G PV PS T + S ++P+ Y S + S +S S PT P Y+
Sbjct: 1605 PTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYS 1662
>Z81463-2|CAB03851.1| 342|Caenorhabditis elegans Hypothetical
protein C06B8.3 protein.
Length = 342
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 65 GDKQHRHYGQSKYNFRHFARS 3
GD Q +YG SK + HF RS
Sbjct: 34 GDSQMTYYGMSKADLNHFTRS 54
>U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of clr
protein 1 protein.
Length = 430
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 255 DIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 380
D+ + +YA ++ +YH H S S ++ P++P YN
Sbjct: 162 DMSIIEQQQYAENIPESKQYHRMHHFKSVISHNSLPSNPNYN 203
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +3
Query: 147 RAKRSADDEPLWLFKDNNE-PRAPSTGDHPVLPSIIDDIKLNPN--TRYARSLSTPNKYH 317
R+ R D E + F + +E P + D +P+ + + +P + TP YH
Sbjct: 1172 RSPRQQDPESMESFNEASEAPPDQRSEDQEAIPAEEPEEEQDPEEPVEINYDIPTPASYH 1231
Query: 318 GGSHTISKSSQSTGPTHPGYN 380
+ ++ S GP P ++
Sbjct: 1232 SSTDSVDLESPIMGPAPPQFS 1252
>AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrate
adaptor proteinSOC-1 protein.
Length = 430
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 255 DIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 380
D+ + +YA ++ +YH H S S ++ P++P YN
Sbjct: 162 DMSIIEQQQYAENIPESKQYHRMHHFKSVISHNSLPSNPNYN 203
>AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical
protein Y105C5A.1 protein.
Length = 767
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +3
Query: 129 VGPVTMRAKRSADDEPLWLFKDNNEPRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPN 308
+ P RAK + +P L ++ P PS+ V+P I+ D N + TP+
Sbjct: 49 IPPPPKRAKMMEEQKPKDLLENPQLPEVPSSSASFVIPQIVVD---NEEVPEDPRMKTPS 105
Query: 309 KYHGGS 326
G S
Sbjct: 106 PIQGAS 111
>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
protein B0379.3b protein.
Length = 1050
Score = 27.5 bits (58), Expect = 5.9
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Frame = +3
Query: 81 RRDLPVIYPTYRPRPTVGPVTMRAKRSADDEPLWL--FKDNNE------PRAPSTGDHPV 236
RR++ V P Y+P G ++ A +P F N + PRAP++ + V
Sbjct: 399 RRNVIVPDPNYQPSTFAGGISNNADDDGSLQPTTSSHFNRNTDRSTSRPPRAPTSPVNRV 458
Query: 237 LPSIIDDIKLNPNTRYARSLST-PNKYHGGSHTISKSSQSTGPTHPGYNRRHVRSFD 404
+ + D + + A S PN + GG+ +S+S+ + G P Y R R D
Sbjct: 459 MET--DPLMGQGTSSGAPQRSAIPNPF-GGAPALSRSTITNGNRGPSYGDRGERVQD 512
>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
protein B0379.3a protein.
Length = 1054
Score = 27.5 bits (58), Expect = 5.9
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Frame = +3
Query: 81 RRDLPVIYPTYRPRPTVGPVTMRAKRSADDEPLWL--FKDNNE------PRAPSTGDHPV 236
RR++ V P Y+P G ++ A +P F N + PRAP++ + V
Sbjct: 403 RRNVIVPDPNYQPSTFAGGISNNADDDGSLQPTTSSHFNRNTDRSTSRPPRAPTSPVNRV 462
Query: 237 LPSIIDDIKLNPNTRYARSLST-PNKYHGGSHTISKSSQSTGPTHPGYNRRHVRSFD 404
+ + D + + A S PN + GG+ +S+S+ + G P Y R R D
Sbjct: 463 MET--DPLMGQGTSSGAPQRSAIPNPF-GGAPALSRSTITNGNRGPSYGDRGERVQD 516
>U70854-5|AAB09157.1| 589|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 11 protein.
Length = 589
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 105 PTYRPRPTVGPVTMRAKRSADDEPLWLFKD 194
P Y+ P PVT + ++ + +EP L KD
Sbjct: 44 PIYKNSPVAKPVTEQQRKKSSEEPAELRKD 73
>U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein 756
protein.
Length = 425
Score = 27.5 bits (58), Expect = 5.9
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 102 YPTYRPRPTVGPVTMRAKRSADDEPLWLFKDNNEPRAPS---TGDHPVLPSIIDDIKLNP 272
YPTYRP PT T+++ R A + P W P S HP + S D + +
Sbjct: 345 YPTYRPLPTRS--TVQSPRPAYN-PYWQSPVTQAPHHNSHHHHHHHPRVSSSSDPQQRHQ 401
Query: 273 NTRY--ARSLSTPNK 311
+ ++ A+++S PN+
Sbjct: 402 SQQHYLAQTVSNPNR 416
>AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 protein
protein.
Length = 425
Score = 27.5 bits (58), Expect = 5.9
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 102 YPTYRPRPTVGPVTMRAKRSADDEPLWLFKDNNEPRAPS---TGDHPVLPSIIDDIKLNP 272
YPTYRP PT T+++ R A + P W P S HP + S D + +
Sbjct: 345 YPTYRPLPTRS--TVQSPRPAYN-PYWQSPVTQAPHHNSHHHHHHHPRVSSSSDPQQRHQ 401
Query: 273 NTRY--ARSLSTPNK 311
+ ++ A+++S PN+
Sbjct: 402 SQQHYLAQTVSNPNR 416
>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical protein
C05D12.2 protein.
Length = 1052
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 489 GCSLDEFGRCSCYH*TSKGFHHDAYCYANRNYVHDVC 379
G ++D+FGRC C + + D C+ Y +C
Sbjct: 960 GGNVDKFGRCICPSRYTGDYCWDRICHPPATYSFGIC 996
>U13644-1|AAB52683.1| 437|Caenorhabditis elegans Hypothetical
protein F56D2.5 protein.
Length = 437
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 56 VCRRNDMLEKRFTCYLSYISSTAHSRP 136
+C N M+E F CY + I A + P
Sbjct: 114 ICEENQMMEVLFMCYQTIIDLMAQNTP 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,543,648
Number of Sequences: 27780
Number of extensions: 248334
Number of successful extensions: 688
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -