Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E11
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family prote...    29   1.4  
At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family prote...    29   1.4  
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    29   1.4  
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS...    29   1.4  
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    28   4.2  
At1g65270.3 68414.m07401 expressed protein                             27   5.5  
At1g65270.2 68414.m07400 expressed protein                             27   5.5  
At1g65270.1 68414.m07399 expressed protein                             27   5.5  
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot...    27   5.5  
At5g51290.1 68418.m06358 ceramide kinase-related contains weak s...    27   9.6  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    27   9.6  

>At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 484

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 123 PTVGPVTMRAKRSA--DDEPLWLFKDNNEPRA 212
           PT  P TM  + S+  D EP W F D  EP A
Sbjct: 158 PTEDPTTMTEETSSSEDKEPFWGFGDKTEPWA 189


>At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 484

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 123 PTVGPVTMRAKRSA--DDEPLWLFKDNNEPRA 212
           PT  P TM  + S+  D EP W F D  EP A
Sbjct: 158 PTEDPTTMTEETSSSEDKEPFWGFGDKTEPWA 189


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 192 DNNEPRAPSTGDHPVLPSIIDDIKLNPN-TR----YARSLSTPNKYHGGS 326
           DNN P +P        P  ID ++L+PN TR    YA  +ST + +  G+
Sbjct: 595 DNNLPSSPLFTKGITAPGNIDSLRLSPNFTRRFSTYAERISTTSSFSDGA 644


>At1g31630.1 68414.m03884 MADS-box family protein similar to
           MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
          Length = 339

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 186 FKDNNEPRAPSTGDHPVLPSIIDDIKLNPNTRY 284
           F DN + +AP   +H +   I D++ L+PN +Y
Sbjct: 239 FSDNIQYQAPVDFNHQIQHGIYDNLSLDPNHQY 271


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 204  PRAPSTGDHPVLPSII-DDIKLNPNTRYARS---LSTPNKYHGGSHTISKSSQSTGPTHP 371
            P +PS G  P  PS      K +P+  Y+ S   LS  + Y   S   S +S S  PT P
Sbjct: 1715 PTSPSYG--PTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSP 1772

Query: 372  GYN 380
             Y+
Sbjct: 1773 SYS 1775



 Score = 26.6 bits (56), Expect = 9.6
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +3

Query: 204  PRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 380
            P +PS    P  PS          T  A S ++P  Y   S + S +S S GPT P YN
Sbjct: 1673 PTSPSYS--PTSPSYSPTSPSYSPTSPAYSPTSPG-YSPTSPSYSPTSPSYGPTSPSYN 1728


>At1g65270.3 68414.m07401 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 279 RYARSLSTPNKYHGGSHTISKSSQSTGPT 365
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g65270.2 68414.m07400 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 279 RYARSLSTPNKYHGGSHTISKSSQSTGPT 365
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g65270.1 68414.m07399 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 279 RYARSLSTPNKYHGGSHTISKSSQSTGPT 365
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
           similar to serine carboxylase II-3 GB:CAA55478 GI:474392
           from [Hordeum vulgare]
          Length = 479

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +3

Query: 174 PLWLFKDNNEPRAPSTGDHPVLPSIIDDIKLNPNTRY 284
           P+W+F  + +   P  G   ++  + DD+  N    Y
Sbjct: 380 PVWVFSGDEDSVIPLLGSRTLVKELADDLNFNTTVPY 416


>At5g51290.1 68418.m06358 ceramide kinase-related contains weak
           similarity to ceramide kinases (GI:21624342) [Mus
           musculus]
          Length = 608

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 330 YDYLHGICLEYSNCERTSC*GSV*C 256
           +D L   CL+ S+CE T+C G + C
Sbjct: 40  HDGLSWKCLDSSDCEGTTCLGIIIC 64


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
           Pfam PF04054: CCR4-Not complex component, Not1; contains
           TIGRFAM TIGR01612: reticulocyte binding protein; similar
           to General negative regulator of transcription subunit 1
           (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
           gb|T44328 and gb|AA395265
          Length = 2378

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 174 PLWLFKDNNEPRAPSTGDHPVLPSIID---DIKLNP 272
           PL L + N  P  PS    P+LPS+     D+ +NP
Sbjct: 860 PLQLQQKNEVPSVPSNEAKPLLPSLSTTSVDVSVNP 895


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,823,069
Number of Sequences: 28952
Number of extensions: 223655
Number of successful extensions: 593
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)