Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E10
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    29   0.33 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   3.1  
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    25   5.4  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   7.1  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   7.1  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             24   9.4  
SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p...    24   9.4  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    24   9.4  

>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 29.1 bits (62), Expect = 0.33
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 193 WPESLERYIKRCYEKCKSAFDRDQIDICLKGRITAAANKDEIWTRNWDEEPIPSVHSERN 372
           WP+SL+ +I RC +  +    + +++  +K  I+       IW  +W    + S+    N
Sbjct: 9   WPDSLKEFIGRCIQDAEEN-SQPELEDEVKLLISRQYEMGNIWNVDWSSMNLESLRKLTN 67


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 149 QFSSLIQCIRHLQEHGQRA*KG-ILKDVMRNANLHLIVTKLIY 274
           QF S+   I HL+ HG+ +    +++  +   NL  ++++ IY
Sbjct: 683 QFDSIPSLIHHLKTHGEESLTNVVIQSSISERNLGPVLSRRIY 725


>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 18  STSY*CPITSSSFGRYPYSSRRTKECRCYGEFTRRIILKN 137
           S SY  P+   S G YPY          +G   +R+I++N
Sbjct: 141 SLSYLPPVAMDS-GNYPYEIVTPTSTEGWGSLLKRMIIEN 179


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 321 PNFIFIGRSCNTSL*TY 271
           P+F+F   SCNTSL  Y
Sbjct: 697 PHFLFSNGSCNTSLCYY 713


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 107 RIHQKNHSQKWSLQQFSSLIQCIRHLQEHGQRA*KGILKDVMRNA 241
           +IH      KW L + +++ +  + L+E G     G+ K++M  A
Sbjct: 520 KIHDLTKIDKWFLSKLANMAKVYKELEEIGSL--YGLNKEIMLRA 562


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 15/53 (28%), Positives = 18/53 (33%)
 Frame = +1

Query: 187 GTWPESLERYIKRCYEKCKSAFDRDQIDICLKGRITAAANKDEIWTRNWDEEP 345
           GTW +     I     K   +   D+ D C KG  TA             EEP
Sbjct: 416 GTWAKEPNHLIGIIDGKHSHSLHHDKFDACTKGENTANNGYGPQTLNETSEEP 468


>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 71

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 310 DEIWTRNWDEEPI 348
           D +W  NWD+E I
Sbjct: 38  DTLWENNWDDEDI 50


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 19/78 (24%), Positives = 33/78 (42%)
 Frame = +1

Query: 136 MEPATILKSNPMYQTSPGTWPESLERYIKRCYEKCKSAFDRDQIDICLKGRITAAANKDE 315
           ++P  I + NP   T+P    E    Y  R  E  K+   R+ + +   G+    AN+  
Sbjct: 144 LKPPAITEQNPFLDTAPTPRLEDSPFYDPRTKESRKTRGSRN-LHLNESGKFIEEANQAR 202

Query: 316 IWTRNWDEEPIPSVHSER 369
              R  D +   ++HS +
Sbjct: 203 RQARLEDLKKRIALHSHK 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,630
Number of Sequences: 5004
Number of extensions: 35562
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)