Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E10
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 40 7e-04
01_01_0965 - 7589659-7589785,7590188-7590317,7590339-7590438,759... 30 0.99
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 29 1.3
01_06_0328 + 28507942-28508610,28509669-28510826 29 2.3
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004... 27 5.3
03_03_0145 + 14833043-14833113,14833544-14833662,14833834-148339... 27 5.3
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 27 7.0
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 27 9.2
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 187 GTWPESLERYIKRCYEKCKSAFDRDQIDICLKGRITAAANKDEIWTRNWDEEPI 348
G+ P SL Y+ R +CK R + LK IT A + T+NWD EP+
Sbjct: 339 GSIPVSLRTYVGRNVSRCKDDAQRSAVQNILKEIITKATADGILHTKNWDIEPL 392
>01_01_0965 -
7589659-7589785,7590188-7590317,7590339-7590438,
7590524-7590643,7590910-7591145,7591585-7591714
Length = 280
Score = 29.9 bits (64), Expect = 0.99
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 232 EKCKSAFDRDQIDICLKGRITAAANKDEIWTRNWDEEPIPSVHS--ERNILTVKPVHNTL 405
EKC+ A + D+C I+ A + EI + EEP+ + S E ++ ++ + N
Sbjct: 139 EKCRDALANMKFDVCFSSPISRAKSTAEIIWKG-KEEPLIFLDSLKEAHLFFLEGMTNAF 197
Query: 406 NLY 414
NL+
Sbjct: 198 NLF 200
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +1
Query: 154 LKSNPMY-QTSPGTWPESLERYIKRCYEKCKSAFDRDQIDICLKGRITAAANKDEIWTRN 330
L P Y S + P SL Y R CK + ++ +A + T+N
Sbjct: 343 LSKKPAYVSVSMRSLPFSLHNYATRNLNCCKDEAQKAACQSMIEEIKNSAIADGTLLTKN 402
Query: 331 WDEEPI 348
WD EP+
Sbjct: 403 WDTEPL 408
>01_06_0328 + 28507942-28508610,28509669-28510826
Length = 608
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 354 TRYRLFIPISCPNFIFIGRSCNTSL*TYINLVTIKCRF 241
TRY + +P S PNF+ TS + L++ C F
Sbjct: 241 TRYSILMPFSVPNFLHANIIAGTSSVLLLCLLSFACLF 278
>09_06_0308 -
22199389-22199451,22199604-22199924,22200178-22200423,
22202152-22203337,22203487-22203551,22204205-22204486,
22205005-22205106,22205587-22206105
Length = 927
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 76 EE*GYLPKEEEVMGHQ*EVEEEALE 2
EE GY P+ EE EVEEEA+E
Sbjct: 94 EEEGYAPEAEEEAEADEEVEEEAVE 118
>03_03_0145 +
14833043-14833113,14833544-14833662,14833834-14833991,
14834147-14834587
Length = 262
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 115 PEESFSKMEPATILKSNPMYQTSPGTWPESL 207
PE S + P + + P Y T +WP SL
Sbjct: 222 PEPSEDQEAPNNVARPQPRYPTEASSWPISL 252
>10_08_0444 +
17971724-17971797,17972119-17972176,17972613-17972708,
17972974-17973000,17973019-17973075,17973604-17973687,
17974304-17974384,17974928-17975071,17975218-17975309,
17975998-17976079,17976818-17977000,17977360-17977438,
17977555-17977613,17978162-17978290,17979188-17979367,
17980312-17980446,17980528-17980602,17980890-17980947,
17981035-17981282,17981594-17981733,17981961-17982132,
17982797-17982887,17983099-17983221,17984951-17985032,
17985715-17985835,17985886-17985915,17986427-17986549
Length = 940
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 96 RCYGEFTRRIILKNGACNNSQV*SNV 173
RCY EFT +I N C + Q+ N+
Sbjct: 455 RCYVEFTASLIQLNAECGDGQLDMNL 480
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 218 LKDVMRNANLHLIVTKLI 271
L DV+RNA+LH I T+L+
Sbjct: 109 LPDVLRNADLHKIQTELV 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.130 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,368,774
Number of Sequences: 37544
Number of extensions: 207354
Number of successful extensions: 389
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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