Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E10
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5883| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   3e-04
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)                29   1.3  
SB_43599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_6938| Best HMM Match : Nodulin-like (HMM E-Value=0.17)              28   3.1  
SB_58679| Best HMM Match : PX (HMM E-Value=0.93)                       27   9.5  
SB_58518| Best HMM Match : WRKY (HMM E-Value=0.072)                    27   9.5  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_24004| Best HMM Match : EGF (HMM E-Value=5.7e-14)                   27   9.5  

>SB_5883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 184 PGTWPESLER-YIKRCYEKCKSAFDRDQIDICLKGRITAAANKDEIWTRNWDEEPIP 351
           P   P   ER Y+++ +E+C +  D+D+ +  LK R+  A      W  +WD+E +P
Sbjct: 59  PKPQPRQEERDYVQKAFEQCVTESDKDETERYLKERLANAFKDGTAWIIDWDKEDLP 115


>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
          Length = 2386

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 106  ENSPEESFSKMEPATILKSNPMYQTSPGTWPESLERYIKRCYEKCKSAFDRDQI 267
            E   E  F + E  ++LK  P++      W   L +++   YEKC  AFD   I
Sbjct: 1292 EKEKELCFLRCEVTSVLKEAPLH------WMP-LTKFLSEFYEKCSHAFDMSSI 1338


>SB_43599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +1

Query: 235 KCKSAFDRDQIDICLKGRITAAANKDEIWTRNWDEEPIPSVHSERNILTVKPVHNTLNLY 414
           +C+S F   Q D+CL G +  A     +   N      P++     + T     N  N++
Sbjct: 94  QCRSYFPNRQFDMCL-GVVDQAIGHLNVHAPN-----SPAILPTLAVKTSSDGSNLNNVH 147

Query: 415 QKSDIISPSIK 447
           QKSDII   +K
Sbjct: 148 QKSDIIQGRLK 158


>SB_6938| Best HMM Match : Nodulin-like (HMM E-Value=0.17)
          Length = 484

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 398 LCTGLTVKILRSLCTLGIGSSSQFLVQISSLLAAA 294
           LCTGL   ++  +  L  G  S FLV   ++L +A
Sbjct: 225 LCTGLAQSVIEKIVILFPGGKSSFLVSWGAVLPSA 259


>SB_58679| Best HMM Match : PX (HMM E-Value=0.93)
          Length = 231

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 241 KSAFDRDQIDICLKGRITAAANKDEIWTRNWDEEPIP 351
           +S    DQI+  L GR       DEI ++   E+PIP
Sbjct: 126 QSKLSVDQIEAYLDGRYKQDLMVDEIISQELSEDPIP 162


>SB_58518| Best HMM Match : WRKY (HMM E-Value=0.072)
          Length = 171

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 118 EESFSKMEPATILKSNPMYQTSPGTWPESLERYIKRCYEKCKSAFDRDQIDICLKGRITA 297
           +E + K+ P  + ++  M +   G W +   +Y+K+    C  AF  +++      R TA
Sbjct: 12  KEDWEKITPVDV-QTKGMSRRLSGPWTDVFSKYLKQSNPYCALAFKYNRVKARNSRRSTA 70


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 334  DEEPIPSVHSERNILTVKPVHNTLN 408
            + + IP  H  +N  TVKP   TLN
Sbjct: 3505 ESDSIPGTHEAKNESTVKPNSGTLN 3529


>SB_24004| Best HMM Match : EGF (HMM E-Value=5.7e-14)
          Length = 808

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 133 KMEPATIL---KSNPMYQTSPGTWPESLERYIKRCYEKCKS 246
           K EP  ++   K+   Y+  P T+   LE+ I + Y+K  S
Sbjct: 251 KKEPTLLIPADKTTNFYKLEPATYKNLLEKEINKSYKKAPS 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.130    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,169,648
Number of Sequences: 59808
Number of extensions: 243480
Number of successful extensions: 563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)