Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E10
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    54   4e-08
At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi...    30   0.83 
At3g17520.1 68416.m02238 late embryogenesis abundant domain-cont...    29   1.5  
At3g08800.1 68416.m01022 expressed protein                             28   2.5  
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r...    28   2.5  
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r...    28   2.5  
At2g44770.1 68415.m05572 phagocytosis and cell motility protein ...    27   7.7  

>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 19/67 (28%), Positives = 41/67 (61%)
 Frame = +1

Query: 157 KSNPMYQTSPGTWPESLERYIKRCYEKCKSAFDRDQIDICLKGRITAAANKDEIWTRNWD 336
           K +    + PGT+P+SL  +++R + +CK   +++  ++ L+  +  A   + ++TR+WD
Sbjct: 451 KDHTTAMSDPGTFPKSLRGFVERAFARCKDDKEKESCEVALRKIVKKAKEDNTLYTRDWD 510

Query: 337 EEPIPSV 357
            EP+ +V
Sbjct: 511 TEPLSTV 517


>At5g16630.1 68418.m01947 DNA repair protein Rad4 family low
           similarity to SP|Q01831 DNA-repair protein complementing
           XP-C cells (Xeroderma pigmentosum group C complementing
           protein) {Homo sapiens}; contains Pfam profile PF03835:
           DNA repair protein Rad4
          Length = 865

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 235 KCKSAFDRDQIDICLKGRITAAANKDEIWTRNWDEEPIPSVHS 363
           K K A D   ID  L+ R     + DE+   +W++ PIPS+ S
Sbjct: 54  KGKQALDARLIDNVLEDRGCGNVDDDEMNDSDWEDCPIPSLDS 96


>At3g17520.1 68416.m02238 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to PIR|S04045|S04045 embryonic
           abundant protein D-29 [Gossypium hirsutum]; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 298

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 274 CLKGRITAAANKDEIWTRNWDEEPIPSVHSERNILTVKPVHNT 402
           C++  I   A KDE WT +W +E I   H +     ++P H T
Sbjct: 25  CVQATIEEEAAKDESWT-DWAKEKIGLKHED----NIQPTHTT 62


>At3g08800.1 68416.m01022 expressed protein
          Length = 936

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 270 INLVTIKCRFAFLITSFNIPF*ALWPCSWRCLIHWIRLENCCRL 139
           I L+ I+CRF  L T  ++    L    + CL+   + E CCRL
Sbjct: 693 IKLMEIRCRFTGLSTEESL---VLELVIFGCLLRLYKFEICCRL 733


>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1147

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = +1

Query: 319 WTRNWDEEPIPSVHSERNILTVKPVHNTLNLYQKSDIISPSIKD 450
           W++NW   P+ +V  ER+ L +K + + L L+Q+  I+S SI+D
Sbjct: 348 WSKNW---PL-AVDEERSKL-LKELQSLLLLFQERKILSCSIRD 386


>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1121

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = +1

Query: 319 WTRNWDEEPIPSVHSERNILTVKPVHNTLNLYQKSDIISPSIKD 450
           W++NW   P+ +V  ER+ L +K + + L L+Q+  I+S SI+D
Sbjct: 348 WSKNW---PL-AVDEERSKL-LKELQSLLLLFQERKILSCSIRD 386


>At2g44770.1 68415.m05572 phagocytosis and cell motility protein
           ELMO1-related contains weak similarity to ELMO1 [Mus
           musculus] gi|16118551|gb|AAL14464
          Length = 266

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 218 IYLSKLSGHVPGDV*YIGLDLRIVAGSIFENDSSGEFSITP 96
           +Y S  +  VPG   ++G  L  V     ++D++  F +TP
Sbjct: 23  VYNSSSAEAVPGSAAWLGRGLSCVCAQRRDSDANSTFDLTP 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.130    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,754,701
Number of Sequences: 28952
Number of extensions: 178448
Number of successful extensions: 428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)