Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E07
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 3.1
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 26 4.2
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 26 4.2
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 25 7.3
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 25 7.3
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 9.6
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 9.6
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.6
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 9.6
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -3
Query: 185 FLAAAATV-GSSIANDSNAPDGKFILRGFSP---VINRYLDVSNK 63
+L T+ +S A+ SN P+ F+ RG+ +INR+ V+ K
Sbjct: 2842 YLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLINRFAHVARK 2886
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 185 FLAAAATVGSSIANDSNAPDGKFILRGFSPV-INRYLDVS 69
+L AA G+++AN S AP+ +F+ FS + IN Y++ S
Sbjct: 1289 YLIIAAAPGTTLANRSVAPE-EFLSSSFSQLDINYYINNS 1327
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 276 LIDEHAAFRVADKNFERFLAYQKYRFRWRLFFS 178
++DE +F K+ E Q R RW+L+F+
Sbjct: 56 VLDETFSFMQEAKDLEPLTPKQDKRLRWKLYFT 88
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 363 DYVQERVNKLPTVYRRTPLGILVARTLPVLIDEHAAFRV 247
D V + + TV T +L +LPV+ D HA F++
Sbjct: 151 DVVPADLRLVETVNFETDEALLTGESLPVIKDAHATFQM 189
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 245 ATRNAACSSMRTGSVRATRIPSGVRRYTVGSLLTLSC 355
A ++ + ++ GS R ++P G R YTV S+ C
Sbjct: 160 ARQHESYATSARGSKRIVQVPGGRRIYTVDSITGQVC 196
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 104 FSPVINRYLDVSNKDVGGRSIVSERDILNSD 12
F P++ +DVSN DV + +RD ++D
Sbjct: 544 FKPIVEGEIDVSNFDVEFTNKAIDRDFSSTD 574
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 599 LNAAKPSTANTLYPSSIFDLIIIPFGVLPKIAGSFTFKL 483
++A P T + P+S F + I+ FG+ IAG F L
Sbjct: 85 IDAIVPVTDDVDIPASTFRMWILAFGLATVIAGVDAFFL 123
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 602 LLNAAKPSTANTLYPSSIFDLIIIPFGVLPKIA 504
L+N + PS +T++P DLI PF + K++
Sbjct: 527 LINRSLPSLKSTMHPGVNKDLITRPFKNVNKMS 559
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 630 YLRFHRSTDTSKRSQTVNSEHTVSVVY 550
Y+R H+S S S++ NSE + S V+
Sbjct: 752 YIRTHQSNTLSSESESRNSESSGSYVH 778
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +1
Query: 1 DASASEFKISRSLTIDRPPTSLLLTSRYLFITGEKPLKINLPSGAL 138
++S++ F + + T+ PP+S LLT+ + I + P ++ + +G L
Sbjct: 343 NSSSNSFSLFPNATLPNPPSSELLTTPFQQI--KPPSQVFMSTGLL 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,230
Number of Sequences: 5004
Number of extensions: 47302
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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