Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E07
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    30   1.9  
02_03_0357 + 18075171-18077240                                         29   3.3  
03_06_0421 - 33797836-33797992,33798450-33798549,33798646-337987...    29   4.3  
06_01_0295 - 2154069-2155483,2155561-2155708                           28   5.7  
03_04_0025 - 16557328-16557851,16558000-16558123,16558518-165586...    28   7.5  
06_01_0165 + 1288107-1290476                                           27   9.9  
01_06_1641 - 38845676-38845693,38846309-38846505,38846800-388472...    27   9.9  

>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 274 ENGKRTRNEDPKWSAAVHGWEFVNPFLYIVGEEKVTIIYLSEE 402
           E    T    P  ++AV GW+F NPF    G E+V    +S+E
Sbjct: 134 ETATATPPPPPPAASAVGGWDFFNPF---YGTEEVAAAAISDE 173


>02_03_0357 + 18075171-18077240
          Length = 689

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 221 SRIKSIALGGDCFLAAAATVGSSIANDSNAPDGKF-ILRGF 102
           S + + A GGD  LAAA  +  S+A   NA D    IL GF
Sbjct: 12  SPVAAAAGGGDKVLAAAQHIVKSLATSKNAADDMIRILSGF 52


>03_06_0421 - 33797836-33797992,33798450-33798549,33798646-33798700,
            33798965-33799085,33799759-33799856,33800004-33800105,
            33800196-33800360,33800441-33800522,33800960-33801117,
            33801214-33801339,33801533-33801616,33802011-33802100,
            33802188-33802258,33803420-33803513,33803585-33803671,
            33804258-33804306,33805450-33805538,33805691-33805756,
            33806009-33806071,33806174-33806282,33806376-33806446,
            33807212-33807298,33807390-33807535,33808848-33808953,
            33809429-33809494,33809672-33809741,33810839-33811206
          Length = 959

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 215  IKSIALGGDCFLAAAATVGSSIANDSNAPDGKFILRGFSPVINR--YLDVSNKDVGGRSI 42
            ++   L  DC LAA   VG S+ +D  + D + +L   S  +NR    D+S +    R +
Sbjct: 852  LQGYKLPPDCSLAAVFVVGFSLTDDGES-DEQVVLVSQSGTVNRIKVKDISIRSRSARGV 910

Query: 41   VSER 30
            +  R
Sbjct: 911  ILMR 914


>06_01_0295 - 2154069-2155483,2155561-2155708
          Length = 520

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 239 KISKGFSRIKSIALGGDCFLAAAATVGSSI 150
           +++ G  R  S+ LGG  FLA AA  G+S+
Sbjct: 107 RVTAGRGRRPSMLLGGAAFLAGAAVGGASV 136


>03_04_0025 -
           16557328-16557851,16558000-16558123,16558518-16558654,
           16561050-16561185,16561296-16561721
          Length = 448

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = -3

Query: 242 IKISKGFSRIKSIALGGDCFLAAA---ATVGSSI--ANDSNAPDGKFILRGFSPVINRYL 78
           +K  +  SR+   AL G  F  AA   A V       N  N PD   +++   P++N   
Sbjct: 319 LKDPQKLSRVMDPALEGQYFATAAHKAALVAYKCLSGNPKNRPDMCQVVKDLEPLLNVTD 378

Query: 77  DVSNKDVGGRSIVSERDILNSDAEA 3
           DVS++ V   + V E + +  +  A
Sbjct: 379 DVSDESVAPIAPVREDNAVRKERTA 403


>06_01_0165 + 1288107-1290476
          Length = 789

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 250 AECGVFVDENGKRTRNEDPKWSAAVHGWEFVNPFLYIVGEEKVTI 384
           A  G  + E      NE+P W    H W  +  F+   G+++V +
Sbjct: 701 ARAGRILFEKATLVDNEEPVWEVLAHIWTELIVFIAPSGDDEVQV 745


>01_06_1641 -
           38845676-38845693,38846309-38846505,38846800-38847265,
           38847351-38847536
          Length = 288

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = -3

Query: 371 SSPTMYKKGLTNSQPCTAALHLGSSLRVRFPFSSTNTPHSA*QIKISKGFSRIKSIALGG 192
           SS  +     T S  CTAAL LG+ +      S   T  +  Q   S+GF     +  G 
Sbjct: 16  SSSLLLVSSQTTSDSCTAALSLGNLI------SFNTTGLNCFQAWSSQGF----ILRFGK 65

Query: 191 DCFLAAAATVGSSIANDSNAPD-GKFILRGFSP 96
           D   A + +V + +    +APD G +I  GFSP
Sbjct: 66  DASSAGSNSVWNFVL---SAPDSGGYIAVGFSP 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,611,817
Number of Sequences: 37544
Number of extensions: 294457
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)