Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E07
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36630.2 68417.m05198 expressed protein                             31   0.89 
At4g36630.1 68417.m05199 expressed protein                             31   0.89 
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    28   4.8  
At1g53260.1 68414.m06035 hypothetical protein low similarity to ...    28   4.8  
At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    28   6.3  
At3g05970.1 68416.m00681 long-chain-fatty-acid--CoA ligase / lon...    28   6.3  
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d...    27   8.3  

>At4g36630.2 68417.m05198 expressed protein
          Length = 950

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 232 EIFICYAECGVFVDENGKRTRNEDPKWSAAVHGWEFVNPFLYIVGEEKVTI 384
           E+ +     GVFVD+NGK  + E   WS A       NP+   +   +V +
Sbjct: 204 ELILGKENIGVFVDQNGKLLQTERICWSEAPTSIVIQNPYAIALLPRRVEV 254


>At4g36630.1 68417.m05199 expressed protein
          Length = 519

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 232 EIFICYAECGVFVDENGKRTRNEDPKWSAAVHGWEFVNPFLYIVGEEKVTI 384
           E+ +     GVFVD+NGK  + E   WS A       NP+   +   +V +
Sbjct: 204 ELILGKENIGVFVDQNGKLLQTERICWSEAPTSIVIQNPYAIALLPRRVEV 254


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1787

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 384 YSNFLLSDYVQERVNKLPTVYRRTPLGILVARTLPVLIDEHAAFRVAD 241
           Y  +  +D+    +N+ P + RR  LG+ + R L + ID  AAF   D
Sbjct: 638 YRLYSKTDFDSMNLNQEPEI-RRVHLGVALLRMLALGIDNIAAFEFVD 684


>At1g53260.1 68414.m06035 hypothetical protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 358

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -3

Query: 245 QIKISKGFSRIKSIALGGDCFLAAAATVGSSIAND-SNAPDGKFILRGFSPVINRYLDVS 69
           Q+  S+  +R+K  ++   C+ A  A V   +++     P  K++L       + YLD  
Sbjct: 78  QVVGSEEEARMKIYSVSHKCYFAFGALVSEDLSHKIKELPKVKWVLP------DSYLDGK 131

Query: 68  NKDVGGRSIVSERDI 24
           NKD GG   +  + +
Sbjct: 132 NKDYGGEPFIDGKAV 146


>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = -3

Query: 245 QIKISKGFSRIKSIALGGDCFLAAAATVGSSIANDSNAPDGKFILRGFSPVINRYLDVSN 66
           QI  S+  +R+K  ++   C+ A  A V   +++          +R   P  + YLDV N
Sbjct: 126 QIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSN---VRWVLP--DSYLDVRN 180

Query: 65  KDVGGRSIVSERDI 24
           KD GG   +  + +
Sbjct: 181 KDYGGEPFIDGKAV 194


>At3g05970.1 68416.m00681 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase (LACS6) strong similarity
           to AMP-binding protein (MF39P) gi:1617274 from Brassica
           napus, similar to putative long-chain-fatty-acid--CoA
           ligase (brain isozyme) GB:P33124 [Rattus norvegicus];
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA AtLACS6 for long-chain acyl-CoA
           synthetase GI:22531705
          Length = 701

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 408 VRFLAQINYSNFLLSDYVQERVNKLPTVYRRTPLGILVARTLPVLIDEHAAFR 250
           V+F +   Y ++L   ++ ER N++ TVY    +G      +  L+D+ AA R
Sbjct: 297 VKFFSSDVYISYLPLAHIYERANQILTVYFGVAVGFYQGDNMK-LLDDLAALR 348


>At1g32490.1 68414.m04009 RNA helicase, putative similar to
           ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1044

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 405 RFLAQINYSNFLLSDYVQERVNKLPTVYRRTPLG-ILV 295
           R+  +INY++   +DY+   +  + T++ R PLG ILV
Sbjct: 580 RYPVEINYTSAPEADYMDAAIVTILTIHVREPLGDILV 617


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,549,781
Number of Sequences: 28952
Number of extensions: 236802
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)