Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E06
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...   124   9e-30
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    77   1e-15
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   3.3  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    26   3.3  
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac...    26   4.4  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   7.7  

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score =  124 bits (299), Expect = 9e-30
 Identities = 65/132 (49%), Positives = 82/132 (62%), Gaps = 7/132 (5%)
 Frame = +2

Query: 2   KVRGLREAFYRQNL-------PNLMNLIATIFVFAIVIYFQGFRVDLPIKSARYRGQYSS 160
           K   L +AF+R  L       PNL N  AT+ VF +VIY Q FRV++PI+S ++RG  S+
Sbjct: 228 KAAALYQAFFRSGLTSSQIQLPNLWNFFATLLVFGVVIYLQDFRVEIPIRSQKFRGYRST 287

Query: 161 YPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPV 340
           +P+KL YTSN PI+LQSAL SNL+  S++L  +FS NFLV  LGVW              
Sbjct: 288 FPVKLLYTSNTPIMLQSALTSNLFFASRLLFNRFSSNFLVRFLGVWEQTA---------T 338

Query: 341 GGLCYYLSPPES 376
            GL YYLSPP S
Sbjct: 339 SGLSYYLSPPAS 350



 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
 Frame = +3

Query: 372 SPSRTFGQX--DPIPTRCSYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGH 545
           SP  +F     DPI T   Y+FF + +CA FSK WI+VSG+S +DVAKQLK QQ+VM GH
Sbjct: 346 SPPASFQDALIDPIHTLV-YVFFTMFACALFSKLWIEVSGASPRDVAKQLKSQQLVMAGH 404

Query: 546 RDNSM 560
           R+ SM
Sbjct: 405 REGSM 409


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 42/127 (33%), Positives = 67/127 (52%)
 Frame = +2

Query: 2   KVRGLREAFYRQNLPNLMNLIATIFVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFY 181
           K   LR   +R    + +  +  I VFA  +Y    R+D+PI+S+R RG   ++P+KL Y
Sbjct: 230 KFSSLRSILFRSEGLSFVQFLVCIAVFATFMYTLNIRIDVPIRSSRVRGVRQNFPLKLLY 289

Query: 182 TSNIPIILQSALVSNLYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVGGLCYYL 361
           TS IP+I   +++S+L V +  L      + +  LL  ++ +      +   VGGL Y+L
Sbjct: 290 TSVIPLIYFYSILSHLLVFAYALYSLCPNSLITRLLVQYSPIDTFAEHKLQLVGGLVYFL 349

Query: 362 SPPESLS 382
            PP  LS
Sbjct: 350 YPPLGLS 356



 Score = 33.1 bits (72), Expect = 0.029
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 423 YIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMI 563
           Y   ++    +FS  W++ +    +DV    KE Q+V+ G+R+ +M+
Sbjct: 368 YTITLICITIYFSLLWMNATAGGPRDVLLFFKENQLVIAGYREATML 414


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 417 CSYIFFMLGSCAFFSKTWIDV 479
           C+Y+ FM+GS  F    WI +
Sbjct: 273 CNYVSFMVGSIIFLVVYWIGI 293


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 98  FQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQ--MLAVKFSGN 271
           F G  VD+  K+ R  G    Y  + F  S + I++   L   +Y   +  +L     GN
Sbjct: 175 FNGL-VDVYRKTYRSDGLRGLY--RGFGPSVVGIVVYRGLYFGMYDTLKPVVLVGPLEGN 231

Query: 272 FLVNLLGVWADVGGGGPARAYPV 340
           FL + L  WA   G G A +YP+
Sbjct: 232 FLASFLLGWAVTTGSGVA-SYPL 253


>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
           Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 82  KDENGSDEVHEVWQVLPVEGFTEPAH 5
           +D+  S EV E W  +  E  +EP H
Sbjct: 61  EDDELSKEVEEAWNQIMAERISEPIH 86


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 71  IFVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQS 211
           I+   + I+F+  R D    SAR    ++   +KL YT    ++  S
Sbjct: 269 IYGILLSIFFKEIRADGNDSSARKPENFNGQAVKLSYTHKFMLVFLS 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,320
Number of Sequences: 5004
Number of extensions: 40360
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)