Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E06
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical p...   227   4e-60
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p...    28   5.3  
AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine r...    28   5.3  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    28   5.3  

>Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical
           protein Y57G11C.15 protein.
          Length = 473

 Score =  227 bits (555), Expect = 4e-60
 Identities = 109/129 (84%), Positives = 114/129 (88%)
 Frame = +2

Query: 2   KVRGLREAFYRQNLPNLMNLIATIFVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFY 181
           KVR LREAFYRQNLPNLMNL+AT  VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFY
Sbjct: 226 KVRALREAFYRQNLPNLMNLMATFLVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFY 285

Query: 182 TSNIPIILQSALVSNLYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVGGLCYYL 361
           TSNIPIILQSALVSNLYVISQMLA KF GNF +NLLG W+D  G    R+YP GGLCYYL
Sbjct: 286 TSNIPIILQSALVSNLYVISQMLAGKFGGNFFINLLGTWSDNTG---YRSYPTGGLCYYL 342

Query: 362 SPPESLSHI 388
           SPPESL HI
Sbjct: 343 SPPESLGHI 351



 Score =  103 bits (248), Expect = 7e-23
 Identities = 55/88 (62%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +3

Query: 303 TWGAAAPRAPIPSGGSATTCPPRSPSRTFGQXDPIPTRCS-YIFFMLGSCAFFSKTWIDV 479
           TW         P+GG    C   SP  + G     P  C  YI FMLGSCAFFSKTWIDV
Sbjct: 323 TWSDNTGYRSYPTGG---LCYYLSPPESLGHIFEDPIHCIIYIVFMLGSCAFFSKTWIDV 379

Query: 480 SGSSAKDVAKQLKEQQMVMRGHRDNSMI 563
           SGSSAKDVAKQLKEQQMVMRGHR+ SMI
Sbjct: 380 SGSSAKDVAKQLKEQQMVMRGHREKSMI 407


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/62 (19%), Positives = 35/62 (56%)
 Frame = +2

Query: 71  IFVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 250
           + +   VIY+   +V++ +K   +  Q+S++  + + +S +    +S L +N++ ++ +L
Sbjct: 39  LILIVFVIYYFSLQVNITVKPPEFNAQFSTFHPEKYISSRLS--PRSRLGNNIFEMASLL 96

Query: 251 AV 256
            +
Sbjct: 97  GI 98


>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 533 HHLLLFQLLRNILSGGSGDIDPGLREERAGAEHE 432
           H ++    +R + S  S  I+ GLRE+   A+HE
Sbjct: 847 HRIVQLDEIREVESSNSTKIEKGLREQLEQAQHE 880


>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
           protein T07C4.10 protein.
          Length = 1013

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 533 HHLLLFQLLRNILSGGSGDIDPGLREERAGAEHE 432
           H ++    +R + S  S  I+ GLRE+   A+HE
Sbjct: 847 HRIVQLDEIREVESSNSTKIEKGLREQLEQAQHE 880


>AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein199 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 40  PAKPHEPHRYHFRLCYSHIFPGLPRRPSYQVCTLPRPVLIISDQVVLHFKYTNHSAVSAC 219
           P K   P + H      ++F  LP  P Y       PV ++++ +  HF +     V  C
Sbjct: 156 PIKCFVPEQTH---ALQYVFQNLPCLPRY---IYDGPVYVVAEDITYHFSFIFSLHVLIC 209

Query: 220 FQ 225
           F+
Sbjct: 210 FE 211


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 191 IPIILQSALVSNLY-VISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVG 343
           +P+     + SNL  V+ Q+   K +G   + +  + ADVGG  P R + VG
Sbjct: 298 VPVSNTPDITSNLKKVVEQVALAKAAGKSSMTVSAL-ADVGGSKPKREHSVG 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,169,098
Number of Sequences: 27780
Number of extensions: 246540
Number of successful extensions: 895
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)