Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E06
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78720.1 68414.m09175 protein transport protein sec61, putati... 175 2e-44
At2g34250.1 68415.m04190 protein transport protein sec61, putati... 170 5e-43
At1g29310.1 68414.m03583 protein transport protein sec61, putati... 169 1e-42
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 28 3.7
At4g01290.1 68417.m00170 expressed protein 28 5.0
At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote... 27 8.7
At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727 ... 27 8.7
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 8.7
At4g31510.1 68417.m04475 expressed protein low similarity to MTD... 27 8.7
At4g18570.1 68417.m02749 proline-rich family protein common fami... 27 8.7
>At1g78720.1 68414.m09175 protein transport protein sec61, putative
similar to SP|P38377 Protein transport protein Sec61
alpha subunit isoform 1 (Sec61 alpha- 1) {Canis
familiaris}; contains Pfam profile PF00344: eubacterial
secY protein
Length = 475
Score = 175 bits (425), Expect = 2e-44
Identities = 84/136 (61%), Positives = 104/136 (76%)
Frame = +2
Query: 2 KVRGLREAFYRQNLPNLMNLIATIFVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFY 181
KVR LREAF+RQNLPN+ NL AT+ +F IVIYFQGFRV LP++S RGQ SYPIKLFY
Sbjct: 229 KVRALREAFFRQNLPNVTNLHATVLIFLIVIYFQGFRVVLPVRSKNARGQRGSYPIKLFY 288
Query: 182 TSNIPIILQSALVSNLYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVGGLCYYL 361
TSN+PIILQSALVSN+Y ISQ+L KF GNFLVNL+G W + G ++ PVGG+ YY+
Sbjct: 289 TSNMPIILQSALVSNIYFISQILYRKFGGNFLVNLIGTWKESEYSG--QSIPVGGIAYYI 346
Query: 362 SPPESLSHIRSXGPHS 409
+ P SL+ + + H+
Sbjct: 347 TAPSSLAEMATHPFHA 362
Score = 79.8 bits (188), Expect = 1e-15
Identities = 34/46 (73%), Positives = 42/46 (91%)
Frame = +3
Query: 423 YIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSM 560
Y+ FML +CA FSKTWI+VSGSSAKDVA+QL+EQQMVM GHRD+++
Sbjct: 365 YLVFMLAACALFSKTWIEVSGSSAKDVARQLREQQMVMPGHRDSNL 410
>At2g34250.1 68415.m04190 protein transport protein sec61, putative
similar to PfSec61 [Plasmodium falciparum] GI:3057044;
contains Pfam profile PF00344: eubacterial secY protein
Length = 475
Score = 170 bits (414), Expect = 5e-43
Identities = 84/136 (61%), Positives = 101/136 (74%)
Frame = +2
Query: 2 KVRGLREAFYRQNLPNLMNLIATIFVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFY 181
KV LR+AFYRQNLPN+ NL+AT+ +F IVIYFQGFRV LP++S RGQ SYPIKLFY
Sbjct: 229 KVAALRQAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFY 288
Query: 182 TSNIPIILQSALVSNLYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVGGLCYYL 361
TSN+PIILQSALVSNLY ISQ+L KFSGNF VNLLG W + G ++ PV GL Y +
Sbjct: 289 TSNMPIILQSALVSNLYFISQLLYRKFSGNFFVNLLGQWKESEYSG--QSIPVSGLAYLI 346
Query: 362 SPPESLSHIRSXGPHS 409
+ P S S + + H+
Sbjct: 347 TAPASFSDMAAHPFHA 362
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +3
Query: 423 YIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSM 560
YI FML +CA FSKTWI+VSGSSA+DVAKQLKEQQMVM GHR++++
Sbjct: 365 YIVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNL 410
>At1g29310.1 68414.m03583 protein transport protein sec61, putative
similar to PfSec61 [Plasmodium falciparum] GI:3057044;
contains Pfam profile PF00344: eubacterial secY protein
Length = 475
Score = 169 bits (410), Expect = 1e-42
Identities = 83/136 (61%), Positives = 101/136 (74%)
Frame = +2
Query: 2 KVRGLREAFYRQNLPNLMNLIATIFVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFY 181
KV LR+AFYRQNLPN+ NL+AT+ +F IVIYFQGFRV LP++S RGQ SYPIKLFY
Sbjct: 229 KVAALRQAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKSARGQQGSYPIKLFY 288
Query: 182 TSNIPIILQSALVSNLYVISQMLAVKFSGNFLVNLLGVWADVGGGGPARAYPVGGLCYYL 361
TSN+PIILQSALVSNLY ISQ+L KFSGNF VNLLG W + G ++ PV GL Y +
Sbjct: 289 TSNMPIILQSALVSNLYFISQLLYRKFSGNFFVNLLGQWKESEYSG--QSIPVSGLAYLI 346
Query: 362 SPPESLSHIRSXGPHS 409
+ P S + + + H+
Sbjct: 347 TAPASFADMAAHPFHA 362
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +3
Query: 423 YIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSM 560
YI FML +CA FSKTWI+VSGSSA+DVAKQLKEQQMVM GHR++++
Sbjct: 365 YIVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNL 410
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 306 WGAAAPRAPIPSGGSATTCPPRSPSRTFGQXDPIPT 413
W + P P P + PP SPS T G P+P+
Sbjct: 157 WSSDPPLPPPPPPYPSPLPPPPSPSPTPGPDSPLPS 192
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 321 PRAPIPSGGSATTCPPRSPSRTFGQXDPIPT 413
P +P+PS G PP SPS T G P+P+
Sbjct: 242 PDSPLPSPG-----PPPSPSPTPGPDSPLPS 267
>At4g01290.1 68417.m00170 expressed protein
Length = 991
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 312 AAAPRAPIPSGGSATTCPPRSPSRTFGQXDP 404
+A R P P TT PP S T G+ DP
Sbjct: 631 SATERRPPPPSMKTTTPPPSVKSTTAGEADP 661
>At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1006
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 348 SATTCPPRSPSRTFGQX-DPIPTRCSYIFFMLGSCAFFSKTWIDVSGSSAKDVAKQLK 518
S+ + P + R G+ +PIPT C ++ + G+ F S ++ SG S D + L+
Sbjct: 467 SSYSSPKNTCGRCSGEDREPIPTTCRCVYPITGTLTFRSPSF---SGYSNNDTFENLR 521
>At5g20470.1 68418.m02433 myosin, putative similar to PIR|T00727
myosin heavy chain PCR43 [Arabidopsis thaliana]
Length = 556
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 426 IFFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQ 527
IFF C F +TW+ +AKD+ K L E +
Sbjct: 31 IFFF---CLMFIQTWLHSEQEAAKDLRKALSEAE 61
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 103 GLPRRPSYQVCTLPRPVLIISDQVVLHFKYTNH 201
G+P P V P + ISD ++LHF + +H
Sbjct: 179 GVPEEPEIVV----EPFITISDGIILHFSHGHH 207
>At4g31510.1 68417.m04475 expressed protein low similarity to MTD1
[Medicago truncatula] GI:9294810
Length = 214
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 474 DVSGSSAKDVAKQLKEQQMVMRGHRD 551
D SS+ D +LKE++M M HRD
Sbjct: 168 DDDDSSSDDETSKLKEKRMKMTNHRD 193
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 336 PSGGSATTCPPRSPSR 383
PS GSATT PP +PS+
Sbjct: 41 PSSGSATTKPPINPSK 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,594,451
Number of Sequences: 28952
Number of extensions: 232693
Number of successful extensions: 821
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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