Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E05
(267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 3.1
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 24 4.1
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 23 7.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 23 7.2
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 23 9.6
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 23 9.6
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 23 9.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 23 9.6
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 23 9.6
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 23 9.6
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 9.6
>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.2 bits (50), Expect = 3.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 253 GINFNCFIYYYDKNKGFPLLYLDVRTIIFHTH 158
GIN I + K F +L+L VRT+ +H
Sbjct: 59 GINLPILIRLHFYKKLFTILWLTVRTVALLSH 90
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 23.8 bits (49), Expect = 4.1
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 249 LISTVLYTIMIRIKDSLYSI*TSERLSSIRIMT 151
L+ T+L+T++I ++Y + L+ + +MT
Sbjct: 486 LLGTILFTVLIFFLPTIYVFYAAFALTRVSVMT 518
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 117 IDYSLHKHHNRYYAFLILA 61
+ +S K+HNR+YA + L+
Sbjct: 128 LSFSNVKNHNRFYAHVFLS 146
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 49 RCRIGKDQESVVSIM 93
RC+IGK+++ V +IM
Sbjct: 246 RCKIGKEKDIVFTIM 260
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 22.6 bits (46), Expect = 9.6
Identities = 6/29 (20%), Positives = 16/29 (55%)
Frame = -1
Query: 93 HNRYYAFLILADSAAGDPSLTPPGGVVAL 7
+ ++Y++L+ + G+P P G + +
Sbjct: 334 NQKFYSYLVKRNGGEGEPEFRLPMGFIGI 362
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 22.6 bits (46), Expect = 9.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 138 NSGDIIKIDYSLHKHHNRYYAFLILADSAAGDPSLTPP 25
++ ++ I Y L ++ YAFL + SA + + PP
Sbjct: 113 SNDSMVNICYMLKATISKRYAFLGSSQSAKAELIMVPP 150
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 22.6 bits (46), Expect = 9.6
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -3
Query: 238 CFIYYYDKNKGFPLLYLDVRTIIFHTHNDKNVLKFR*YHQNRL 110
CFI YD + ++ + +F ++D N++K H ++L
Sbjct: 9 CFIGGYDNDNDKVIVVVTKNLELFKKYDDINLIKEAYNHVHKL 51
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 22.6 bits (46), Expect = 9.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -1
Query: 267 LK*CLELISTVLYTIMIRIKDSL 199
LK CL+ + + +IM+ ++DS+
Sbjct: 150 LKDCLQTFPSAISSIMVPLRDSI 172
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 22.6 bits (46), Expect = 9.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 21 HRGASN*DPPLQNRQGSRKRSIYYGAYVDYSR 116
H GA P ++ G IYY A+VD+SR
Sbjct: 479 HEGALYASPATESSPGV----IYYKAHVDWSR 506
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 22.6 bits (46), Expect = 9.6
Identities = 6/29 (20%), Positives = 16/29 (55%)
Frame = -1
Query: 93 HNRYYAFLILADSAAGDPSLTPPGGVVAL 7
+ ++Y++L+ + G+P P G + +
Sbjct: 334 NQKFYSYLVKRNGGEGEPEFRLPMGFIGI 362
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 22.6 bits (46), Expect = 9.6
Identities = 6/29 (20%), Positives = 16/29 (55%)
Frame = -1
Query: 93 HNRYYAFLILADSAAGDPSLTPPGGVVAL 7
+ ++Y++L+ + G+P P G + +
Sbjct: 334 NQKFYSYLVKRNGGEGEPEFRLPMGFIGI 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,204
Number of Sequences: 5004
Number of extensions: 17764
Number of successful extensions: 35
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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