Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E05
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397 29 0.51
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 29 0.67
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419... 27 1.6
06_02_0013 - 10581449-10585105 27 2.7
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 26 3.6
09_04_0002 - 13567257-13567373,13568049-13568243,13569750-135698... 26 4.8
04_04_0408 + 24987218-24987760,24988406-24988534,24988617-249889... 26 4.8
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137... 26 4.8
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 25 6.3
10_01_0335 + 3695427-3695483,3695564-3695945,3696191-3696258 25 8.3
06_02_0016 - 10623796-10625317,10626493-10627541 25 8.3
>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
Length = 851
Score = 29.1 bits (62), Expect = 0.51
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = -1
Query: 249 LISTVLYTIMIRIKDSLYSI*TSERLSSIRIMTRMY*NSGDIIKIDYSLHKHHNRYYAFL 70
+I V +T+ K+ S R S+ + T+ G++ + D + K R F
Sbjct: 481 VIHVVFFTLEDNDKEKEVGNTNSVRNGSV-VRTQNNSAEGNLAEKDSCIDKRRKRLLLFA 539
Query: 69 ILADSAAGDPSLTPPGG 19
+L + LTPPGG
Sbjct: 540 VLGATLTYQAGLTPPGG 556
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.7 bits (61), Expect = 0.67
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 120 KIDYSLHKHHNRYYAFL--ILADSAAGDPSLTPPGGV 16
K D S KH R Y L +LA S L PPGGV
Sbjct: 815 KEDKSKKKHATRKYLMLLGVLAASVTYQAGLNPPGGV 851
>08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,
4190096-4190387,4190486-4191357,4192298-4192354,
4192391-4192504,4192966-4193595
Length = 1232
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 16 DSTGGRQTRIPRCRIGKDQESVVSIMV 96
D GGR+ R P CR + E VV + V
Sbjct: 1181 DGGGGRKVRGPYCRFCRSAEEVVRVSV 1207
>06_02_0013 - 10581449-10585105
Length = 1218
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 123 IKIDYSLHKHHNRYYAFL-ILADSAAGDPSLTPPGG 19
I +D+ L +Y L ILA S + LTPPGG
Sbjct: 68 ITVDFELLWRLRKYLVMLAILAVSVTYNAGLTPPGG 103
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -1
Query: 108 SLHKHHNRYYAFL--ILADSAAGDPSLTPPGGV 16
S KH R Y L +LA S L PPGGV
Sbjct: 580 SKKKHATRKYLMLLAVLAASVTYQAGLNPPGGV 612
>09_04_0002 -
13567257-13567373,13568049-13568243,13569750-13569869,
13569958-13570028,13570066-13570126,13570170-13570202,
13570303-13570431,13571958-13572042,13572143-13572252,
13572534-13572606,13572688-13572810,13573111-13573289,
13573659-13573736,13573813-13573871,13574122-13574212,
13574265-13574442,13574553-13575088
Length = 745
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 256 LGINFNCFIYYYDKNKGFPLLYLDV 182
LG+ CF Y++ G PL++++V
Sbjct: 253 LGVGRRCFGYFHPAIPGEPLIFIEV 277
>04_04_0408 +
24987218-24987760,24988406-24988534,24988617-24988952,
24990321-24990551
Length = 412
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 244 FNCFIYYYDKNKGFPL 197
F CFI+Y+ K + FPL
Sbjct: 397 FCCFIWYFKKRRFFPL 412
>03_03_0132 +
14711645-14711839,14712641-14712970,14713689-14713751,
14713833-14713906,14714004-14714099,14714705-14714759,
14714867-14714971,14715054-14715135,14715450-14715562,
14715717-14716118
Length = 504
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 256 LGINFNCFIYYYDKNKGFPLLYLDVRTIIFHTH 158
+G N N + KGF LYL +II +T+
Sbjct: 54 VGANRNQAFVEFTSRKGFQKLYLPTNSIIVYTY 86
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = -1
Query: 99 KHHNRYYAFL--ILADSAAGDPSLTPPGGV 16
KH R Y L +LA S L PPGGV
Sbjct: 665 KHAKRKYFMLLGVLAASVTYQAGLNPPGGV 694
>10_01_0335 + 3695427-3695483,3695564-3695945,3696191-3696258
Length = 168
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 21 HRGASN*DPPLQNRQGSRKRSI 86
H S PPL+N GS KRSI
Sbjct: 132 HPSTSKSIPPLRNGTGSTKRSI 153
>06_02_0016 - 10623796-10625317,10626493-10627541
Length = 856
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -1
Query: 114 DYSLHKHHNRYYAFLILADSAAGDPSLTPPGG 19
D + K R IL + A LTPPGG
Sbjct: 512 DKEVEKRRERLLLLAILVATIAYQAGLTPPGG 543
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,977,709
Number of Sequences: 37544
Number of extensions: 112764
Number of successful extensions: 225
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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