Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E05
         (267 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical pr...    29   0.45 
Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AC084159-11|ABO16465.1|  449|Caenorhabditis elegans F-box a prot...    25   7.4  

>Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical
           protein F35H8.2 protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 241 NCFIYYYDKNKGFPLLYLDVRTIIFHTHNDKNVLKFR 131
           +C I +   ++ + L Y++ RT++  THND+N  + R
Sbjct: 49  DCAIMFNKSSEDY-LTYIENRTLLETTHNDRNCFQIR 84


>Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical
           protein B0391.6 protein.
          Length = 483

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 124 DITGILIHSCHYAYGR*SF 180
           DI  ILI S H+ YGR  F
Sbjct: 413 DIRNILIESPHFRYGRFKF 431


>AC084159-11|ABO16465.1|  449|Caenorhabditis elegans F-box a protein
           protein 221 protein.
          Length = 449

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 124 DITGILIHSCHYAYGR*SF 180
           DI  ILI S H+ YGR  F
Sbjct: 379 DIRNILIESPHFRYGRFKF 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,852,202
Number of Sequences: 27780
Number of extensions: 97487
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)