Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E05
         (267 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04320.2 68417.m00617 malonyl-CoA decarboxylase family protei...    27   2.2  
At4g04320.1 68417.m00616 malonyl-CoA decarboxylase family protei...    27   2.2  
At4g02440.1 68417.m00331 F-box family protein  to circadian cloc...    26   3.0  
At5g39970.1 68418.m04847 expressed protein low similarity to up-...    25   9.1  
At3g24600.1 68416.m03090 hypothetical protein                          25   9.1  
At2g46070.1 68415.m05731 mitogen-activated protein kinase, putat...    25   9.1  

>At4g04320.2 68417.m00617 malonyl-CoA decarboxylase family protein
           contains weak similarity to Malonyl-CoA decarboxylase,
           mitochondrial precursor (EC 4.1.1.9) (MCD)
           (Swiss-Prot:O95822) [Homo sapiens]; contains Pfam
           profile PF05292: Malonyl-CoA decarboxylase (MCD)
          Length = 517

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 256 LGINFNCFIYYYDKNKGFPLLYLDV 182
           LGI   CF Y++    G PL++++V
Sbjct: 246 LGIGRRCFGYFHPSVPGEPLIFIEV 270


>At4g04320.1 68417.m00616 malonyl-CoA decarboxylase family protein
           contains weak similarity to Malonyl-CoA decarboxylase,
           mitochondrial precursor (EC 4.1.1.9) (MCD)
           (Swiss-Prot:O95822) [Homo sapiens]; contains Pfam
           profile PF05292: Malonyl-CoA decarboxylase (MCD)
          Length = 518

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 256 LGINFNCFIYYYDKNKGFPLLYLDV 182
           LGI   CF Y++    G PL++++V
Sbjct: 247 LGIGRRCFGYFHPSVPGEPLIFIEV 271


>At4g02440.1 68417.m00331 F-box family protein  to circadian clock
           coupling factor ZGT (GP|14210079) {Nicotiana tabacum};
           contains Pfam PF00646: F-box domain
          Length = 336

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 63  ADSAAGDPSLTPPGGVVAL 7
           + S A D SLTPPGG  +L
Sbjct: 74  SSSTAADSSLTPPGGWASL 92


>At5g39970.1 68418.m04847 expressed protein low similarity to
           up-regulated by thyroid hormone in tadpoles; expressed
           specifically in the tail and only at metamorphosis;
           membrane bound or extracellular protein; C-terminal
           basic region [Xenopus laevis] GI:1234787
          Length = 690

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 258 CLELISTVLYTIMIRIKDSLYSI*TSERLSSIRIMTRMY*NSGDIIKID 112
           C+E I    Y  M+   D    +  S++   I ++T     SG+++KID
Sbjct: 203 CIEKIGNGSYLNMVPHPDGSNRVFLSDQPGKIYLVTVPAQGSGELLKID 251


>At3g24600.1 68416.m03090 hypothetical protein
          Length = 506

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 27  GASN*DPPLQNRQGSRKRSIYYG 95
           GAS   PP+   +G   RS YYG
Sbjct: 132 GASQSSPPIVYIKGVNVRSFYYG 154


>At2g46070.1 68415.m05731 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK12) mitogen-activated protein
           kinase (MAPK)(AtMPK12), PMID:12119167
          Length = 372

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 162 VWKIIVLTSR*SKGNPLFLS**YIKQLKLIPSII 263
           +W +  +      G PLF    Y+ QL+LI  ++
Sbjct: 225 IWSVGCILGEIMTGQPLFPGKDYVHQLRLITELV 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,514,482
Number of Sequences: 28952
Number of extensions: 90027
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,070,560
effective HSP length: 67
effective length of database: 10,130,776
effective search space used: 212746296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)