Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E04
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|c...    88   5e-19
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    29   0.23 
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    27   1.2  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    26   2.8  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   5.0  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   6.6  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    24   8.7  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    24   8.7  

>SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 138

 Score = 88.2 bits (209), Expect = 5e-19
 Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
 Frame = +2

Query: 29  EGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRTEVRCSKCSA 208
           +G++VC  CK+ L+ +  K++S CGWPAF D L   KV   +D S G+ R E  C+ C  
Sbjct: 44  QGVFVCAACKELLYKASTKFESHCGWPAFFDNLP-GKVKRIEDNSYGMHRVEAVCANCGG 102

Query: 209 HLGHVF--DDGPTPTRKRFCINSASLDF 286
           HLGH+F  +    PT +R CINSASL+F
Sbjct: 103 HLGHIFKGEGYSNPTDERHCINSASLEF 130


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 191 CSKCSAHLGHVFDDGPTPTRKRFCINSAS 277
           C+KC A LG  F D     +  FC N +S
Sbjct: 334 CTKCGATLGPFFQDSSVEVKISFCHNCSS 362


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 128 AREKVTLHKDTSAGLVRTEVRCSKCSAHLGHVFDDGPTPTRKRFCINS-ASLDFIPAEER 304
           AR++ T  K  S  ++R  +RC++C+A +  + D    P    +   S AS ++ P  E+
Sbjct: 63  ARKEKTGEKYFSIDILRFYIRCTRCAAEITFITD----PKHADYAAESGASRNYEPWHEK 118

Query: 305 K 307
           +
Sbjct: 119 R 119


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -2

Query: 349 KYKNFINLCTFDFVFPFFSRNEVQGSRIYTKTFSGGCWPIIEHMPQMSG 203
           KY+      TFD +  F   NEV GS I  +  +     I   MPQ+ G
Sbjct: 150 KYRINFTRSTFDLLVQFLFENEVNGSGIIIRLLNQYI-DIKITMPQVEG 197


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 99  HPESYLFLELNRSCLQTIQTYKPSS*TLLKQ 7
           HP S L  E+  +CLQ     +PS+  LL +
Sbjct: 307 HPYSTLLCEIVEACLQREPNKRPSARELLSK 337


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 207 AEHLEHRTSVRTKPALVSLCKVTFSLARTSLKAGHPH 97
           AE  E   ++   PA  SL + ++ +ART   + +PH
Sbjct: 96  AEVFELTNTLAASPAPPSLSEPSYVMARTPSSSPYPH 132


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 292 RNEVQGSRIYTKTFSGGCWPIIEH 221
           RN++ G+ ++ KTF    W II++
Sbjct: 337 RNQIYGTEVHRKTFPQLPWLIIKN 360


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 153 LCKVTFSLARTSLKAGHPHPESYLFLELNRSCLQTIQTYKPSS 25
           L +V  +L R  L    P P+  L    +RS + T+  Y P S
Sbjct: 262 LKEVYSNLERQGLLPSSPPPKESLLRRSSRSLIGTVGGYLPQS 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,345
Number of Sequences: 5004
Number of extensions: 43164
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)