Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E04
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)                   29   2.2  
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         28   2.8  
SB_10836| Best HMM Match : Fork_head (HMM E-Value=0)                   28   2.8  
SB_54001| Best HMM Match : Macscav_rec (HMM E-Value=0.87)              27   5.0  
SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)              27   5.0  
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_53827| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)               27   5.0  

>SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)
          Length = 757

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 245 WVLAHHRTHAPDERSTWSTALRFAPNL 165
           W    H  H  + RS+W + +RF P+L
Sbjct: 334 WRSMGHMYHTNESRSSWDSIVRFTPSL 360


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +2

Query: 104 WPAFNDVLAREKVTLHKDTS--AGLVRTEVRCSKCSAH-LGHVFDDGPTP 244
           WP F D    +K TL  D+S           C   + H LGH FD   TP
Sbjct: 346 WPCFTDTRMIDKRTLFDDSSRRGTYWANYATCLGAAMHELGHCFDLAHTP 395


>SB_10836| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 458

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 308 LSFLQQE*SPRKQNLYKNVFGWVLAHHRTHAPDERSTWSTALR 180
           L F+  E SP K+   K+++ W++ H   +  D R  W  ++R
Sbjct: 130 LIFMAIEESPNKRLPVKDIYNWIMDHF-PYFRDARLGWKNSVR 171


>SB_54001| Best HMM Match : Macscav_rec (HMM E-Value=0.87)
          Length = 528

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 205 GALGAPHFGSHQTCTCIFM*SDLFPC*NIIKSWPSTSRVIF 83
           G L +PH  + +T T + M S    C NI++ WPS    +F
Sbjct: 92  GELMSPH--NDRTKTQLLMDSTCDACVNILQKWPSLKPKLF 130


>SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)
          Length = 1084

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 172 QTCTCIFM*SDLFPC*NIIKSWPSTSRVIFIFRTK*ILFTNYTNI 38
           Q  T I +  + FP  NI  S+P+T   I I   K   F NY  +
Sbjct: 18  QPRTYIILSDEYFPAQNISSSFPNTQVNINIISAKKANFVNYLEV 62


>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 119 DVLAREKVTLHKDTSAGLVRTEVRCSKCSAHLGHVFDDGPTPTRKRFCI 265
           + L+R  +   +D + GL R   RC + +    H F    +P  K+ C+
Sbjct: 272 NTLSRRSLESRRDATRGLARAHRRCRRQNGKRWHAFGTHTSP-GKQLCL 319


>SB_53827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 267 FIQKRFRVGVGPSSNTCPR*AEHLEHRTSVRTKPALVSLCKVTFSLA 127
           F +  F V   PS N C    + + HRT   T  +++  C + F+L+
Sbjct: 299 FSRNYFFVVYWPSFNACLTTDDVMRHRTVTNTYYSMLGACVMVFALS 345


>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
          Length = 976

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 23/62 (37%), Positives = 31/62 (50%)
 Frame = +2

Query: 134 EKVTLHKDTSAGLVRTEVRCSKCSAHLGHVFDDGPTPTRKRFCINSASLDFIPAEERKDK 313
           EK T HKDT   L  +E    K +  LG + +  P P        + S+  IPAEER +K
Sbjct: 771 EKST-HKDTKDALELSEKTYLKLARTLGALLEVDPVP-------GTRSMAHIPAEER-EK 821

Query: 314 VE 319
           +E
Sbjct: 822 LE 823


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,690,685
Number of Sequences: 59808
Number of extensions: 315001
Number of successful extensions: 698
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)