Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E04
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   4.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.9  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   7.8  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   7.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 15/75 (20%), Positives = 30/75 (40%)
 Frame = -3

Query: 282 SKEAEFIQKRFRVGVGPSSNTCPR*AEHLEHRTSVRTKPALVSLCKVTFSLARTSLKAGH 103
           +K+ EF+  + R+  GP++    R +   EH         ++   K+     RT L    
Sbjct: 399 TKKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESI 458

Query: 102 PHPESYLFLELNRSC 58
                   L++++ C
Sbjct: 459 QRKSDITELDVSKRC 473


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 15/75 (20%), Positives = 30/75 (40%)
 Frame = -3

Query: 282 SKEAEFIQKRFRVGVGPSSNTCPR*AEHLEHRTSVRTKPALVSLCKVTFSLARTSLKAGH 103
           +K+ EF+  + R+  GP++    R +   EH         ++   K+     RT L    
Sbjct: 105 TKKLEFVVGQHRILKGPANPDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESI 164

Query: 102 PHPESYLFLELNRSC 58
                   L++++ C
Sbjct: 165 QRKSDITELDVSKRC 179


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 288 FLLKKGKTKSKVHKFIKFLY 347
           F  +KGK  S+ HK +  +Y
Sbjct: 14  FYFRKGKNASQAHKKLCAVY 33


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 233 GPTPTRKRFCINSASLDFIPAEERKDKV 316
           GP      FC  S SL  + A+ R +K+
Sbjct: 50  GPNVINPFFCDMSPSLSLLCADTRLNKL 77


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 205 RSSGACVR*WANTHPKTFLYKFCFLG 282
           R  G C R   N  PK    K C  G
Sbjct: 45  RCDGRCQRFCPNVVPKPLCIKICAPG 70


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 205 RSSGACVR*WANTHPKTFLYKFCFLG 282
           R  G C R   N  PK    K C  G
Sbjct: 45  RCDGRCQRFCPNVVPKPLCIKICAPG 70


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 207 LIWGMCSMMGQHPPENVFV 263
           +IW  C+      P N+FV
Sbjct: 69  VIWIFCAAKSLRTPSNMFV 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,669
Number of Sequences: 438
Number of extensions: 3094
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)