Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E04
(431 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21860.1 68417.m03161 methionine sulfoxide reductase domain-c... 99 1e-21
At1g53670.1 68414.m06107 transcription factor-related similar to... 96 8e-21
At4g04840.1 68417.m00706 methionine sulfoxide reductase domain-c... 93 1e-19
At4g04830.1 68417.m00705 methionine sulfoxide reductase domain-c... 92 1e-19
At4g21840.1 68417.m03158 methionine sulfoxide reductase domain-c... 92 2e-19
At4g21830.1 68417.m03157 methionine sulfoxide reductase domain-c... 89 1e-18
At4g04810.1 68417.m00703 methionine sulfoxide reductase domain-c... 89 2e-18
At4g21850.1 68417.m03159 methionine sulfoxide reductase domain-c... 87 4e-18
At4g04800.1 68417.m00702 methionine sulfoxide reductase domain-c... 83 1e-16
At4g21850.2 68417.m03160 methionine sulfoxide reductase domain-c... 54 3e-08
At2g17705.1 68415.m02051 expressed protein 33 0.063
At4g38730.1 68417.m05486 expressed protein 31 0.34
At4g34820.1 68417.m04941 expressed protein 28 2.4
At1g05790.1 68414.m00605 lipase class 3 family protein contains ... 27 4.1
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 5.5
At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil... 27 5.5
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 27 7.2
At4g02650.1 68417.m00360 epsin N-terminal homology (ENTH) domain... 27 7.2
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 26 9.6
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 26 9.6
At2g41660.1 68415.m05147 expressed protein contains Pfam profile... 26 9.6
>At4g21860.1 68417.m03161 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 202
Score = 99.1 bits (236), Expect = 1e-21
Identities = 48/99 (48%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +2
Query: 2 TGCFNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRT 181
TG +NKV+D+G+Y C C L+ S K+DSGCGWPAF D L +T D R
Sbjct: 102 TGEYNKVFDDGIYCCAGCGTPLYKSTTKFDSGCGWPAFFDGLP-GAITRTPDPDGR--RI 158
Query: 182 EVRCSKCSAHLGHVF--DDGPTPTRKRFCINSASLDFIP 292
E+ C+ C HLGHVF + PTPT +R C+NS SL F P
Sbjct: 159 EITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFTP 197
>At1g53670.1 68414.m06107 transcription factor-related similar to
pilin-like transcription factor [Homo sapiens]
GI:5059062; contains Pfam profile PF01641: SelR domain
Length = 202
Score = 96.3 bits (229), Expect = 8e-21
Identities = 42/93 (45%), Positives = 57/93 (61%)
Frame = +2
Query: 32 GLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRTEVRCSKCSAH 211
G+Y C+ C LF S K+DSG GWP++ + T + + R EV C+ C+AH
Sbjct: 110 GVYNCVCCDTPLFDSSTKFDSGTGWPSYYQPIGNNVKTKLDLSIIFMPRQEVVCAVCNAH 169
Query: 212 LGHVFDDGPTPTRKRFCINSASLDFIPAEERKD 310
LGHVFDDGP PT KR+C+NSA+L E+ +D
Sbjct: 170 LGHVFDDGPRPTGKRYCLNSAALKLNALEKTRD 202
>At4g04840.1 68417.m00706 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062; contains Pfam profile
PF01641: SelR domain
Length = 153
Score = 92.7 bits (220), Expect = 1e-19
Identities = 44/100 (44%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Frame = +2
Query: 2 TGCFNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRT 181
+G + K+++EG+Y C+ C ++ S K+DSGCGWPAF D + + AGL R
Sbjct: 53 SGEYVKLFEEGIYCCVGCGNPVYKSTTKFDSGCGWPAFFDAI--PGAINRTEERAGL-RY 109
Query: 182 EVRCSKCSAHLGHVF-DDG-PTPTRKRFCINSASLDFIPA 295
E+ C+KC HLGHV ++G PTPT +R C+NS +L F A
Sbjct: 110 EITCTKCDGHLGHVLKNEGFPTPTDERHCVNSVALKFSSA 149
>At4g04830.1 68417.m00705 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 139
Score = 92.3 bits (219), Expect = 1e-19
Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Frame = +2
Query: 2 TGCFNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRT 181
TG ++K ++EG++ C+ CK L+ S K+DSGCGWPAF + L +++ RT
Sbjct: 37 TGEYDKFFEEGIFDCVGCKTPLYKSTTKFDSGCGWPAFFEGLPG---AINRTPDPDGRRT 93
Query: 182 EVRCSKCSAHLGHVF--DDGPTPTRKRFCINSASLDFIPAE 298
E+ C+ C HLGHVF + PT +R C+NS S+ F PA+
Sbjct: 94 EITCAACDGHLGHVFKGEGYGNPTDERHCVNSVSISFNPAK 134
>At4g21840.1 68417.m03158 methionine sulfoxide reductase
domain-containing protein / SelR domain-containing
protein weak similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 143
Score = 91.9 bits (218), Expect = 2e-19
Identities = 45/103 (43%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Frame = +2
Query: 5 GCFNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRTE 184
G F K ++EG Y C C L+ S K+DSGCGWPAF D + + + AG R E
Sbjct: 44 GEFTKKFEEGTYSCAGCGTALYKSTTKFDSGCGWPAFFDAIPG---AIKQTPEAGGRRME 100
Query: 185 VRCSKCSAHLGHVF--DDGPTPTRKRFCINSASLDFIPAEERK 307
+ C+ C HLGHVF + TPT +R C+NS SL F A+ K
Sbjct: 101 ITCAVCDGHLGHVFKGEGYSTPTDQRHCVNSVSLKFASADSSK 143
>At4g21830.1 68417.m03157 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 144
Score = 89.0 bits (211), Expect = 1e-18
Identities = 44/99 (44%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Frame = +2
Query: 5 GCFNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRTE 184
G F K ++EG Y C C L+ S K+DSGCGWPAF D + + + AG R E
Sbjct: 45 GEFTKKFEEGTYSCAGCGTALYKSTTKFDSGCGWPAFFDAIPG---AIKQTPEAGGRRME 101
Query: 185 VRCSKCSAHLGHVF--DDGPTPTRKRFCINSASLDFIPA 295
+ C+ C HLGHVF + TPT +R C+NS SL F A
Sbjct: 102 ITCAVCDGHLGHVFKGEGYSTPTDQRHCVNSVSLKFSSA 140
>At4g04810.1 68417.m00703 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 139
Score = 88.6 bits (210), Expect = 2e-18
Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Frame = +2
Query: 11 FNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRTEVR 190
++K ++EG++ CI CK L+ S K+D+GCGWPAF + L +++ RTE+
Sbjct: 40 YDKFFEEGIFSCIGCKTPLYKSTTKFDAGCGWPAFFEGLPG---AINRAPDPDGRRTEIT 96
Query: 191 CSKCSAHLGHVF--DDGPTPTRKRFCINSASLDFIPAE 298
C+ C HLGHV + TPT +R C+NS S++F PA+
Sbjct: 97 CAVCDGHLGHVHKGEGYSTPTDERLCVNSVSINFNPAK 134
>At4g21850.1 68417.m03159 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 143
Score = 87.4 bits (207), Expect = 4e-18
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = +2
Query: 5 GCFNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRTE 184
G + K++D+G+Y C C L+ S K+DSGCGWP+F D + + + AG R E
Sbjct: 45 GEYTKLFDDGIYSCAGCATPLYKSTTKFDSGCGWPSFFDAIPG---AIKQTPEAGGRRME 101
Query: 185 VRCSKCSAHLGHVF--DDGPTPTRKRFCINSASLDF 286
+ C+ C HLGHV + PT T +R C+NS SL F
Sbjct: 102 ITCAACDGHLGHVVKGEGFPTATDERHCVNSVSLKF 137
>At4g04800.1 68417.m00702 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 176
Score = 82.6 bits (195), Expect = 1e-16
Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +2
Query: 2 TGCFNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRT 181
TG + EG+Y C+ C L+ S K+++GCGWPAF + + + + T R
Sbjct: 76 TGEYVNFDKEGVYGCVGCNAPLYKSTTKFNAGCGWPAFFEGIPG---AITRTTDPDGRRI 132
Query: 182 EVRCSKCSAHLGHVF--DDGPTPTRKRFCINSASLDFIPA 295
E+ C+ C HLGHVF + TPT +R C+NS SL F PA
Sbjct: 133 EINCATCGGHLGHVFKGEGFATPTDERHCVNSVSLKFTPA 172
>At4g21850.2 68417.m03160 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 121
Score = 54.4 bits (125), Expect = 3e-08
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 5 GCFNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVL 127
G + K++D+G+Y C C L+ S K+DSGCGWP+F D +
Sbjct: 45 GEYTKLFDDGIYSCAGCATPLYKSTTKFDSGCGWPSFFDAI 85
>At2g17705.1 68415.m02051 expressed protein
Length = 135
Score = 33.5 bits (73), Expect = 0.063
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 176 RTEVRCSKCSAHLGHVFDDGPTPT 247
RT+++C+ C+ +G+++DDGP T
Sbjct: 71 RTKIKCTSCNHLIGYIYDDGPPLT 94
>At4g38730.1 68417.m05486 expressed protein
Length = 326
Score = 31.1 bits (67), Expect = 0.34
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 141 SLYIKIQVQVWCEPKCGAPSAPLIWGMCSMMG 236
S+ I + + ++CEP CG + + G+CS+MG
Sbjct: 152 SMSIVLALILYCEPLCGQTNILVYIGICSLMG 183
>At4g34820.1 68417.m04941 expressed protein
Length = 321
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 268 IYTKTFSGGCWPIIEHMPQMSGALGAPH 185
+Y +T SGG P E + Q+ G L PH
Sbjct: 96 VYRETISGGTVPTTEVVSQVLGCLQLPH 123
>At1g05790.1 68414.m00605 lipase class 3 family protein contains
Pfam profile PF01764: Lipase
Length = 687
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 154 RYKCRFGANRSAVLQVLRSSGACVR*WANTHPKTFLYKFCFLGLHSC 294
+Y R G R+ VL + +G W T TFL CF+ L C
Sbjct: 120 KYVSRDGLPRNCVLGLSPDTGG----WKQTLQVTFLITVCFVALAQC 162
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 307 FPFFSRNEVQGSRIYTKTFSGGCWPIIEHMPQMSGALG 194
FPF S E G IY K WP++ +P +SG LG
Sbjct: 220 FPFSSSVESWGFWIYPKENCLRIWPLL--LPFLSGFLG 255
>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
protein contains Pfam profile: PF04981 NMD3 family
Length = 516
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 11 FNKVYDEGLYVCIVCKQDLFSSKNKYDSGCG 103
+N Y + +C VC++DL +K SG G
Sbjct: 240 YNYKYTYSVKICPVCREDLVCLPSKVASGLG 270
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 243 PPENVFV*ILLPWTSFLLKKGKTKSKVHKF 332
PPE V LL W +F LKKG K V F
Sbjct: 269 PPEKV----LLKWMNFHLKKGGYKKTVSNF 294
>At4g02650.1 68417.m00360 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to Chain A,
Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
(GP:13399999) {Homo sapiens}; supporting cDNA
gi|26451912|dbj|AK118440.1|
Length = 611
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +2
Query: 92 SGCGWPAFNDVLAREKVTLHKDTSAGLVRTEVRCSKCSAHLGHVFD 229
SG GW AFND A D LVR+ R S + LG FD
Sbjct: 438 SGPGWEAFNDNSA--------DWETDLVRSATRLSGQKSELGGGFD 475
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 243 PPENVFV*ILLPWTSFLLKKGKTKSKVHKF 332
PPE V LL W +F LKKG K V F
Sbjct: 270 PPEKV----LLKWMNFHLKKGGYKKTVGNF 295
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 26.2 bits (55), Expect = 9.6
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 29 EGLYVCIVCKQDLFSSK 79
EG+Y+C+ CK ++ S +
Sbjct: 1356 EGMYICVPCKSEVLSKE 1372
>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 297
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 125 LAREKVTLHKDTSAGLVRTEVRCSK 199
LA TL K+ S+GLVR + C K
Sbjct: 159 LAMSTATLVKEMSSGLVRIALECEK 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,203,404
Number of Sequences: 28952
Number of extensions: 222142
Number of successful extensions: 548
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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