Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E02
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               58   6e-09
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_53551| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_364| Best HMM Match : Tim17 (HMM E-Value=0.45)                      28   5.5  
SB_27651| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.6  

>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
 Frame = +2

Query: 11  LYTVLKQFLQIFPELRNAPLFIAGESYAGKYVPALGMEIHKHKNTSDIDINFEGLMIGNA 190
           L T+ K F+   P  +  PL+I  ESY GK   A G+ ++      +I  NF+G+ +G++
Sbjct: 137 LLTMFKAFVNEMPAFQTIPLYIFCESYGGKMTSAFGVTLYNAIQQGEIRCNFKGVALGDS 196

Query: 191 YVDP-EMISHIANVFYYFGLLGQEQANTLKPLVESFQNDIAANRSIEAKNKWVNLITILL 367
           ++ P + +       Y   LL Q   + +    ++  N +A     +A + W     ++ 
Sbjct: 197 WISPVDSVLSWGPYLYSASLLDQLDLDRVNQYAQATANAVANQEWKKATDLWSETENVIA 256

Query: 368 VMTHQKHGYNFL 403
             T     YN L
Sbjct: 257 QTTDNVDVYNIL 268


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 235 LFWSIGTRTGKYPQTSRRIIPKRYSS*QE 321
           LF+ IG +TG++ + SRR  P+R S+ +E
Sbjct: 585 LFYRIGPKTGRWQEYSRRKSPRRTSAEKE 613


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 560 ENFVGSLQSPRLLWATRSDVTV 625
           E FV S  SPRL++A RSD+ +
Sbjct: 152 EKFVPSASSPRLIFANRSDIRI 173


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 245 LLGQEQANTLKPLVESFQNDIAANRSIEAK-NKWV 346
           L+G+   N L PL ESF + +A   S+ +  N WV
Sbjct: 69  LIGRRNVNALPPLSESFPSSVALLTSVRSSCNIWV 103


>SB_53551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 245 DQNSRTRLRCEISFPGQRKHCRSLVPRN*CRYQMCSYACVF-PCP 114
           +Q++  +  CE+SF     +   LVPR    Y      C F PCP
Sbjct: 76  EQDANGKRTCELSFTDHAMNATGLVPRPGFSYCPFKNPCEFSPCP 120


>SB_364| Best HMM Match : Tim17 (HMM E-Value=0.45)
          Length = 437

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 183 PIISPSKLMSISDVFLCLCISMPNAGTYFPAYDSPAIKSGAFLSS 49
           P+   +   S S V    C+ +   G Y P+Y SP  +S  + S+
Sbjct: 109 PVPESNSAWSASSVIGVACLLVSLIGLYTPSYRSPCYRSACYRSA 153


>SB_27651| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 280

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 99  NMCQRWAWKYTSIRTHL 149
           +MC+RW  + TS++THL
Sbjct: 63  DMCERWFTQSTSLKTHL 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,626,084
Number of Sequences: 59808
Number of extensions: 410699
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)