Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E02
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 210  YLTSQTCSTILVYW 251
            Y+TS T S+IL++W
Sbjct: 1411 YVTSSTSSSILLHW 1424


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 210  YLTSQTCSTILVYW 251
            Y+TS T S+IL++W
Sbjct: 1407 YVTSSTSSSILLHW 1420


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 71  FIAGESYAGKYVPALGMEIH 130
           F+ G+ Y GKY+     E+H
Sbjct: 147 FVPGDDYDGKYLVLPSGELH 166


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 562 KLCWIITESSLIVG 603
           K+CW IT  ++ VG
Sbjct: 492 KICWTITTPAICVG 505


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 562 KLCWIITESSLIVG 603
           K+CW IT  ++ VG
Sbjct: 545 KICWTITTPAICVG 558


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 305 YRFGMILREV*-GYLPVLVPIDQNSRTRLRCEISFP 201
           +R   ++R++   YLP ++ + +  +TRLR  +  P
Sbjct: 328 HRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMMEIP 363


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/29 (20%), Positives = 17/29 (58%)
 Frame = -1

Query: 381 WCVITRSIVMRFTHLFLASMLLLAAISFW 295
           WC + RS+ + F+   + ++ +++   +W
Sbjct: 118 WCDVWRSLDVLFSTASILNLCVISLDRYW 146


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 139 LMLVYFHAQR 110
           ++LVYFH QR
Sbjct: 202 MLLVYFHLQR 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,111
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)