Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E01
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   173   7e-45
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   173   1e-44
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   5.0  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   5.0  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    24   8.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  173 bits (422), Expect = 7e-45
 Identities = 78/145 (53%), Positives = 101/145 (69%)
 Frame = +2

Query: 2   FAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEI 181
           FAPTK WR+WH                          ARGH +E+IPE+PLVV D VQ  
Sbjct: 102 FAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSF 161

Query: 182 NKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAF 361
            KTK+AV  L+ IKA+ DV+KV  S++LRAGKGK+RNRR VQR+GPL+++N+D G+ +AF
Sbjct: 162 QKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAF 221

Query: 362 RNIPCIEMLNVNQLNLLKLAPGGHL 436
           RNIP +E++NV +LNLL+LAPGGHL
Sbjct: 222 RNIPGVEIVNVRRLNLLQLAPGGHL 246


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  173 bits (421), Expect = 1e-44
 Identities = 78/145 (53%), Positives = 101/145 (69%)
 Frame = +2

Query: 2   FAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEI 181
           FAPTK WR+WH                          ARGH +E+IPE+PLVV D VQ  
Sbjct: 102 FAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSF 161

Query: 182 NKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAF 361
            KTK+AV  L+ IKA+ DV+KV  S++LRAGKGK+RNRR VQR+GPL+++N+D G+ +AF
Sbjct: 162 QKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAF 221

Query: 362 RNIPCIEMLNVNQLNLLKLAPGGHL 436
           RNIP +E++NV +LNLL+LAPGGHL
Sbjct: 222 RNIPGVEIVNVRRLNLLQLAPGGHL 246


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 133 LNNMPSSLNEGRY-PGRCHGGGHGSTSLP*VHATVPA 26
           L N+P +L   RY     HG  HGS S P     VP+
Sbjct: 47  LYNLPRTLLNSRYYSNHSHGLVHGSKSPPSSQFLVPS 83


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 320 LIIYNKDKGLTRAFRNIPCIEMLNVN 397
           +++++K KG+T  FRN P +E + V+
Sbjct: 134 VLVFSKQKGITVVFRNDP-LESVRVS 158


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 198 ACLVLLISWTLSETTNGNSGIFSTI 124
           AC   L  W L  TTN   G+ S I
Sbjct: 90  ACFHFLSEWLLFRTTNLGPGLLSPI 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,806
Number of Sequences: 5004
Number of extensions: 23778
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)