Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_E01
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 145 2e-35
07_01_0578 + 4295386-4296489,4297394-4297507 144 2e-35
06_03_0865 - 25516072-25517007 29 2.2
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 2.9
11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579... 28 3.8
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 27 5.0
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 27 5.0
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683... 27 5.0
07_01_0866 - 7195305-7195756,7197171-7197447 27 6.6
03_05_0051 - 20288456-20291728 27 8.7
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 145 bits (351), Expect = 2e-35
Identities = 69/146 (47%), Positives = 90/146 (61%), Gaps = 1/146 (0%)
Frame = +2
Query: 2 FAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEI 181
FAPTK WRRWH ARGH +E +PE PLVVSD ++ I
Sbjct: 105 FAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESI 164
Query: 182 NKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD-KGLTRA 358
KT Q++ L++I A++D K S +RAGKGKMRNRR + RKGPLI+Y + + +A
Sbjct: 165 EKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKA 224
Query: 359 FRNIPCIEMLNVNQLNLLKLAPGGHL 436
FRN+P +++ NV +LNLL LAPGGHL
Sbjct: 225 FRNLPGVDVANVERLNLLDLAPGGHL 250
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 144 bits (350), Expect = 2e-35
Identities = 67/146 (45%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Frame = +2
Query: 2 FAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEI 181
FAPTK WR+WH ARGH +E +PELPLV+SD + I
Sbjct: 106 FAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESI 165
Query: 182 NKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKD-KGLTRA 358
KT QA+ L+++ A++D K S +R GKGKMRNRR + RKGPLI+Y + + +A
Sbjct: 166 EKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKA 225
Query: 359 FRNIPCIEMLNVNQLNLLKLAPGGHL 436
FRN+P +++ NV +LNLL LAPGGHL
Sbjct: 226 FRNLPGVDVANVERLNLLDLAPGGHL 251
>06_03_0865 - 25516072-25517007
Length = 311
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 179 SPGPCPRPLTATRESSQQYAL*PEXXXXXXXXXXXXXRQHVSAVGSRDG 33
SP P P P A S+ QY PE +++++VG R G
Sbjct: 233 SPSPPPPPPPAAAASTTQYPFTPEFAAAMQEMIRAEVHKYMASVGVRAG 281
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -1
Query: 100 RYPGRCHGGG---HGSTSLP*VHATVPAPPRLGRRE 2
R+ HGG HG L HA P PP+ RR+
Sbjct: 47 RHEHPAHGGAQHAHGGEQLQLAHARTPTPPQQQRRQ 82
>11_01_0705 -
5795976-5796051,5796450-5796518,5796632-5796780,
5796875-5797006,5797128-5797450,5798166-5798172,
5799126-5799180,5799685-5799740,5799862-5800029,
5800912-5801097,5801269-5801419,5801515-5801743,
5802277-5802532,5802793-5802894
Length = 652
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 275 KGKMRNRRRVQRKGPLIIYNKDKGLTRAFRNIPCIEMLNVNQLNLLKL 418
+GK +NR + +R GPL+ + T + C+E+ N+ N+L++
Sbjct: 248 QGKWKNRLQTRRNGPLLEAYCQQVKTCTEIALKCLEIDRENRPNILEI 295
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 45 TYGRDVL-PWPPPWQRPGYRPSFRLEGILLRR 137
TYG +L P+PPP P PS+ EG ++ R
Sbjct: 275 TYGTPLLQPFPPPTPPPSLTPSYN-EGPIISR 305
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 69 WPPPWQRPGYRPSFRLEGILLRR 137
WPPP P P L+GIL RR
Sbjct: 231 WPPPSFPPSSTPPSDLDGILSRR 253
>04_01_0519 +
6831912-6831978,6832333-6832488,6832748-6833098,
6833481-6833662,6833756-6834004,6834182-6834406,
6837492-6837791,6838642-6839215,6839959-6840059
Length = 734
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 128 VEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVL 241
V K+PE LV + K+Q + K R + A+S++L
Sbjct: 56 VTKVPETKLVANPKIQNVRDLKSLRRLSRSLLAFSNLL 93
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 350 SDPCPYYR**GVLCVGHDDD 291
+DP P R VLC+G+DDD
Sbjct: 92 ADPAPATRREVVLCIGYDDD 111
>03_05_0051 - 20288456-20291728
Length = 1090
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 421 CKLQEVQLVHVEHLDARDVAECTSQT 344
C L +L H+E+LD +D +E T+ T
Sbjct: 964 CPLLRERLEHIENLDIQDCSEITTFT 989
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,182,231
Number of Sequences: 37544
Number of extensions: 210033
Number of successful extensions: 726
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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