Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E01
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               162   1e-40
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)                   28   3.8  
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  162 bits (393), Expect = 1e-40
 Identities = 74/145 (51%), Positives = 95/145 (65%)
 Frame = +2

Query: 2   FAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEI 181
           FAPTK WR+WH                          ARGH +EKI E+PLV+SD ++ +
Sbjct: 99  FAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESV 158

Query: 182 NKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAF 361
            KT  AV  L+ + A+ DV K   S+++RAGKGKMRNRR V RKGPLIIYN D+GL +AF
Sbjct: 159 TKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAF 218

Query: 362 RNIPCIEMLNVNQLNLLKLAPGGHL 436
           RN+P +E+ +V++LNLLKL PGGHL
Sbjct: 219 RNLPGVELQHVDRLNLLKLCPGGHL 243


>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 143 ELPLVVSDKVQEINKTKQAVIF-LRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQ 307
           E+P+ +S  + ++ K KQ ++  +R+    S V+  YK  R   G  K  + + +Q
Sbjct: 284 EMPINLSS-ISDVQKKKQKILSDIRQPNLHSSVIAQYKDYRKHCGNEKCSSNQNIQ 338


>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
          Length = 1074

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 66  PWPPPWQRPGYRPSFR 113
           PWP P + PG RP +R
Sbjct: 480 PWPRPGRTPGRRPGYR 495


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 109 NEGRYPGRCHGGGHGSTSLP*VHATVPAPP 20
           ++G+ P     GGH  T +P +   +PAPP
Sbjct: 377 SQGQQPAPGRQGGHTLTPVPGLPGALPAPP 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,195,358
Number of Sequences: 59808
Number of extensions: 220543
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)