Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E01
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   165   1e-41
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    29   1.1  
AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen prot...    28   2.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  165 bits (401), Expect = 1e-41
 Identities = 74/145 (51%), Positives = 98/145 (67%)
 Frame = +2

Query: 2   FAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPLVVSDKVQEI 181
           FAP K +RRWH                         QARGH+++++ E+PLVVSDKV+  
Sbjct: 101 FAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESF 160

Query: 182 NKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAF 361
            KTK+AV+FLRR   W+D+ KVY S+R RAGKGK+RNR+  Q+ GP++IY +D    RAF
Sbjct: 161 RKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAF 220

Query: 362 RNIPCIEMLNVNQLNLLKLAPGGHL 436
           RNIP ++++NV +LNLLKLAPGGHL
Sbjct: 221 RNIPGVDVMNVERLNLLKLAPGGHL 245


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 22/66 (33%), Positives = 35/66 (53%)
 Frame = +2

Query: 116 RGHIVEKIPELPLVVSDKVQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNR 295
           R  + EK+ +L   +S + +EIN  K+ V    RIK   D L++ KS+R    +  +R R
Sbjct: 353 RSDVEEKLDKLKDDISSREREINAQKEEV---NRIK---DSLRLEKSKRNELEEEVLRQR 406

Query: 296 RRVQRK 313
           R  Q +
Sbjct: 407 RCAQEE 412


>AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen protein
           45 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 343 GSDSCIPQHPLHRDAQREPAEPPEACTR 426
           G D  +PQ P     Q  P++  EACTR
Sbjct: 154 GKDGQVPQGPADGGYQEGPSDAVEACTR 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,618,945
Number of Sequences: 27780
Number of extensions: 151015
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)