Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D24
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   1.3  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   1.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    24   5.1  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    24   6.7  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    24   6.7  
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    24   6.7  
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    24   6.7  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    23   8.8  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    23   8.8  

>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 121 FMMPVVKNDWDIYNSQRSRRTSESAEKV 204
           F+  V++N W +Y S  S R  E+ EK+
Sbjct: 280 FVQFVLENLWAVYESAVSNRNLENIEKI 307


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 124 MMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSP 270
           ++P ++  W      + +  SESA+   +SG + R  S+   + P   P
Sbjct: 480 LIPTIRETWTRKGITQKQHYSESADPTAISGMKRRAHSDRVFDFPPCDP 528


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = -2

Query: 326 YDSERIAGALRCGLSPTARGDSVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCE 162
           Y S R + +     SPT        SE  S    + PP SP  S    V  ++ E
Sbjct: 318 YSSSRPSASASLASSPTRSAFRPKTSETVSSEVVSSPPTSPLHSPVKPVSNEQVE 372


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -3

Query: 253 PRNATLTLSAHDLRSAQPSPQTPKYVETAANCICPNRS*LPAS*TP 116
           P N  L+ SA     A  S   PKYV +  NC+    S L  S  P
Sbjct: 185 PINLPLSYSA---TGAATSNCPPKYVRSTINCVPTTNSLLKKSKIP 227


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 149 QSFLTTGIINAISAAATVTL 90
           +  LTTGI++ ISA A+  L
Sbjct: 138 ERILTTGIVDPISAVASAAL 157


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 182 LRSLRRRLG*AEVVCGKCQSRV-PRGQRCRLAPSG 283
           L++L  +    + +C KC +R+ PR   CR    G
Sbjct: 82  LKALASKYNCEKQICRKCYARLPPRATNCRKKKCG 116


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 182 LRSLRRRLG*AEVVCGKCQSRV-PRGQRCRLAPSG 283
           L++L  +    + +C KC +R+ PR   CR    G
Sbjct: 82  LKALASKYNCEKQICRKCYARLPPRATNCRKKKCG 116


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 326 YDSERIAGALRCGLSPTARGDSVGPSERDSDTFRTRPPLS 207
           Y ++R   +    +SP +   +   S+R + +FR  PP S
Sbjct: 132 YFAKRSESSSSASVSPISPSANRNDSKRQASSFRRSPPSS 171


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 121 FMMPVVKNDWDI---YNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAV 279
           F+  +   D+D+   Y    S +  E  E+  L    +   S+S+S GP  SP+++
Sbjct: 38  FLQSLTDRDFDVKTSYIKDESAKLFEYGER--LYDNLILLSSQSKSLGPVFSPKSL 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,144,685
Number of Sequences: 5004
Number of extensions: 19756
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)