Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D24
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 34 0.030
02_04_0169 + 20554715-20555083,20555150-20555632,20557926-205580... 28 1.5
09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963... 28 2.0
11_04_0129 - 13763651-13763911,13763978-13764327,13764448-137646... 27 3.5
06_01_0749 + 5599238-5600128 27 3.5
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 27 4.6
04_04_0716 + 27513201-27513854 27 4.6
04_03_0984 - 21432119-21432157,21432722-21434068 27 4.6
04_01_0087 + 954313-954612 27 4.6
03_05_1045 - 29914581-29914829,29914840-29916083,29919055-299191... 27 4.6
09_06_0335 + 22391378-22391480,22391580-22391769,22392747-223928... 26 6.1
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 26 6.1
01_06_0385 + 28914888-28916342 26 6.1
01_05_0674 - 24187820-24188713,24188809-24189204 26 6.1
10_01_0115 - 1426573-1426590,1426838-1426912,1427106-1427464,142... 26 8.0
06_03_0395 - 20354713-20355570 26 8.0
05_07_0013 + 27044145-27044339,27044461-27045558 26 8.0
05_03_0533 + 15117535-15118248 26 8.0
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108... 26 8.0
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 33.9 bits (74), Expect = 0.030
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 154 IYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLS 324
++ + ++ SE + +SG R R + S P SP G SP+RS RS S
Sbjct: 115 VFAEENRKKPSEMRSRDRISGSRGRSYDQRYSRSPRYSPPPRGRSPYRSPSYSRSPS 171
>02_04_0169 +
20554715-20555083,20555150-20555632,20557926-20558003,
20558141-20558143
Length = 310
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 280 RRREATALAPRNATLTLSAHDLRSAQPSPQTPKYVETAANCICP 149
R+RE +LA R A L L SA P P P + A + P
Sbjct: 150 RKRERNSLAARCARLGLGGSSSSSAPPPPPPPAAADDTAAVMPP 193
>09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,
9631299-9631358,9633374-9633444,9633626-9633663,
9633824-9633876,9633970-9635235,9635632-9635672,
9636821-9636887
Length = 996
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = -2
Query: 176 RDRCELYMSQSFLTTG-----IINAISAAATVTLEFERF*GNNVNCMTKNCSSITENST 15
RDR + MS S ++TG + + V L+F+ + +N+ C T N + +TE ++
Sbjct: 855 RDRYGVEMSCSSISTGGNGRGLPLNLKNKKIVVLQFQIYVHHNIRCSTDNANLVTEETS 913
>11_04_0129 -
13763651-13763911,13763978-13764327,13764448-13764606,
13764677-13765160
Length = 417
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 262 ALAPRNATLTLSAHDLRSAQPSP--QTPKYVETAANCICPNRS 140
A R A + S DL +A PSP +P T + +CPN +
Sbjct: 12 AFKERIAAIKTSPTDLTAASPSPLPASPTSAPTWYSTVCPNNN 54
>06_01_0749 + 5599238-5600128
Length = 296
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 160 NSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMR 315
+S RS++ S S+ + R +R+ P+LSPR G +P R + R
Sbjct: 27 SSPRSKKRSSSSRRAAAGDRR----PAARAPNPSLSPRGGGGAPSRKSERRR 74
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 292 ADSARRREATALAPRNATLTLSAH-DLRSAQPSPQTP 185
A S RRR A A PR+ L+ H + R P P +P
Sbjct: 193 APSRRRRSAIATPPRHPRRRLAPHANRRRPAPPPASP 229
>04_04_0716 + 27513201-27513854
Length = 217
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 286 SARRREATALAPRNATLTLSAHDLRSAQPSPQT--PKYVETAA 164
+AR + ALA + T L+ DL P P T PK V+ AA
Sbjct: 82 AARAHDVAALAIKGRTAHLNFPDLAHLLPRPATAAPKDVQAAA 124
>04_03_0984 - 21432119-21432157,21432722-21434068
Length = 461
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 141 LDYRHHKRHLGGGNG 97
LD++H +RH GGG G
Sbjct: 407 LDHQHRRRHGGGGGG 421
>04_01_0087 + 954313-954612
Length = 99
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 141 LDYRHHKRHLGGGNGDS 91
+D HH H GGG GD+
Sbjct: 35 VDDNHHHHHRGGGGGDA 51
>03_05_1045 -
29914581-29914829,29914840-29916083,29919055-29919199,
29919727-29919792,29919882-29920108,29920204-29920310,
29920428-29920502,29920600-29920688,29920768-29920848,
29921631-29921702,29922056-29922178
Length = 825
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 241 TLTLSAHDLRSAQPSPQTPKYVE 173
++TLS DL P QTP YVE
Sbjct: 133 SITLSPRDLDKNSPGYQTPVYVE 155
>09_06_0335 +
22391378-22391480,22391580-22391769,22392747-22392813,
22393177-22393206
Length = 129
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 182 LRSLRRRLG*AEVVCGKCQSRV-PRGQRCRLAPSG 283
L++L R+ +++C KC +R+ PR CR G
Sbjct: 82 LQALARKYNQDKMICRKCYARLHPRAVNCRKKKCG 116
>03_06_0581 +
34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 103 AAAEMAFMMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVG 282
AA+ + V+ D D++ + +E V GG ++ S S G L PRA
Sbjct: 83 AASSHPLVSEVLVADSDVFAHPLAEPWAELLRSVQHKGGYSHVIASSTSFGKNLLPRAAA 142
Query: 283 L 285
L
Sbjct: 143 L 143
>01_06_0385 + 28914888-28916342
Length = 484
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 304 ARCDADSARRREATALAPRNATLTLSAHDLRSAQPSPQ--TPKYVETAA 164
A C A +A R A + + + H++++AQP P+ +PK AA
Sbjct: 235 AMCFARNAGDRSTAAQLLEHPFVAFACHEVKAAQPKPRWVSPKSTLDAA 283
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -3
Query: 301 RCDADSARR--REATALAPRNATLTLSAHDLRSAQPSP 194
R D D R R ATA+ PR A + L + QP P
Sbjct: 317 RADDDDVRTKSRAATAMKPRPAVAPIMQRRLANEQPPP 354
>10_01_0115 -
1426573-1426590,1426838-1426912,1427106-1427464,
1427551-1427656,1428091-1428207,1428319-1428420,
1428520-1428613,1428697-1428746,1429029-1429106,
1429189-1429455,1429573-1429672,1429757-1430039,
1430312-1430357
Length = 564
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 226 RKVSESRSEGPTLSPRAVGLSP 291
RK+S +R E PTLSP L P
Sbjct: 354 RKISRARIEHPTLSPVCEELPP 375
>06_03_0395 - 20354713-20355570
Length = 285
Score = 25.8 bits (54), Expect = 8.0
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 307 PARCDADSARRRE-ATALAPRNATLTLSAHDLRSAQPSPQTPKYVETAANCIC 152
PA A + RRR+ T + PR A +A R QP P T +E AN C
Sbjct: 93 PATAAAVTNRRRQPTTQIRPRAA--VDAADRGRRRQPPPPTAPPLEAPANGCC 143
>05_07_0013 + 27044145-27044339,27044461-27045558
Length = 430
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -2
Query: 299 LRCGLSPTARGDSVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGII 123
L+ L+P GD+ G D D+ R +PT +E R S+S + G +
Sbjct: 139 LKLSLAPVVYGDTTGGVNDDDDSSR-----APTVMTSTEERPATAACVASRSLIPNGAV 192
>05_03_0533 + 15117535-15118248
Length = 237
Score = 25.8 bits (54), Expect = 8.0
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -3
Query: 325 TTASA*PARCDADSARRREATALAPRNATLTLSAHDLRSAQPSPQTPKYVETAA 164
TTAS+ A A R A A A + + PSP+TP YV+ A
Sbjct: 89 TTASSTDQGESAAGATARSVVAPEEEAAAEEEEAATVLAPVPSPETPAYVKMVA 142
>01_04_0136 +
16506747-16506982,16507128-16507728,16510443-16510842,
16513595-16513709,16513776-16514352
Length = 642
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 286 SARRREATALAPRNATLTLSAHDLRSAQPSPQTPKYVE 173
S RE +L + L++S ++ + P P TP+ E
Sbjct: 173 SVSSREDPSLVEPESDLSISVDSIKESSPKPSTPESKE 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,331,482
Number of Sequences: 37544
Number of extensions: 162410
Number of successful extensions: 696
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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