Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D24
(327 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.29
SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.51
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.51
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 30 0.51
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19) 30 0.51
SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2) 30 0.51
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 30 0.51
SB_5969| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.89
SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5) 28 1.6
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 27 2.7
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 27 3.6
SB_49353| Best HMM Match : AfsA (HMM E-Value=5.5) 27 4.8
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 4.8
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_14904| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) 26 6.3
SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08) 26 6.3
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 26 6.3
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) 26 8.3
SB_34249| Best HMM Match : fn3 (HMM E-Value=0) 26 8.3
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_40272| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=2.4) 26 8.3
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1015
Score = 30.7 bits (66), Expect = 0.29
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = -2
Query: 266 DSVGPSER--DSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGIINAISAAATVT 93
DS G SE D+D + PL ++ + R C L ++TT + + A T
Sbjct: 254 DSGGSSELRCDNDLSEAKEPLVQRIASLTMTRHQACRLRELGQWITTHDWSNLFGAHTCQ 313
Query: 92 LEFERF*GNNVNCMTKNCSSITENSTPID 6
+F+ F + + + C S S P D
Sbjct: 314 AKFDVFYNTITDALDRFCPSTVVRSHPSD 342
>SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 29.9 bits (64), Expect = 0.51
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 68 NNVNCMTKNCSSITENSTPIDN 3
N ++CMT+N S ++EN T +DN
Sbjct: 78 NMLSCMTQNISLLSENETRLDN 99
>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 818
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -2
Query: 287 LSPTARGDSVGPSERDSDTFRTRPPLSPTFSAD-SEVRRDRCELYMSQSFLTTGIINAIS 111
L A+ D+ G + +F PP SPT A+ S + + + Y+++S L + A +
Sbjct: 503 LQQRAKQDNPGSPLIPTPSFEPIPPPSPTSLANASRLYGNNAQQYINESLLQSNAAAAAA 562
Query: 110 AAATVTLEF 84
AAA + ++
Sbjct: 563 AAAAASRKY 571
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 29.9 bits (64), Expect = 0.51
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 263 SVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGI 126
SV P ER + +T P PT + + RR + E+Y+S S T G+
Sbjct: 938 SVTPPER---SLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGV 980
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 260 VGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGI 126
V P ER + +T P PT + + RR + E+Y+S S T G+
Sbjct: 1793 VTPPER---SLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGV 1834
>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1026
Score = 29.9 bits (64), Expect = 0.51
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 263 SVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGI 126
SV P ER + +T P PT + + RR + E+Y+S S T G+
Sbjct: 935 SVTPPER---SLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGV 977
>SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)
Length = 953
Score = 29.9 bits (64), Expect = 0.51
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 263 SVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGI 126
SV P ER + +T P PT + + RR + E+Y+S S T G+
Sbjct: 862 SVTPPER---SLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGV 904
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 29.9 bits (64), Expect = 0.51
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 263 SVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGI 126
SV P ER + +T P PT + + RR + E+Y+S S T G+
Sbjct: 663 SVTPPER---SLQTPVPPKPTEAQKRKARRVKLEMYLSMSLNTQGV 705
>SB_5969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.1 bits (62), Expect = 0.89
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 263 SVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTG 129
SV P E+ T PP PT + + RR++ E+Y+S S T G
Sbjct: 170 SVTPPEKSPQT--PLPP-KPTKAQKRKARREKLEMYLSMSLNTQG 211
>SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)
Length = 561
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -2
Query: 284 SPTARGDSVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTG 129
SP A SV P E+ T PP PT + + RR + E+Y+S S G
Sbjct: 347 SPGASSLSVTPPEKGPQT--PLPP-KPTKAQKRKARRAKLEMYLSMSLNAQG 395
>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 142 NDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSE 252
N +D+ ++SRR E GL GR+R++ + + E
Sbjct: 1093 NQYDVTLEEKSRRLRELESAGGLWEGRIRELEKQKQE 1129
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 27.5 bits (58), Expect = 2.7
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 163 SQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSP-RAVGLSPHRSAPAMRSLS 324
S RSR S SA + S VR S SRS P+LSP R+ S RS +S+S
Sbjct: 414 SSRSRSYSRSASR-SYSRSPVR--SWSRSHSPSLSPQRSRSYSRSRSRSFSKSIS 465
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 136 VKNDWDIYNSQRSRRTSESAEKVGLSG-GRVRKV 234
VKND+D+Y +R R + EK G G R +K+
Sbjct: 312 VKNDFDVYGRKR-RMVTRRVEKSGCCGKNRFKKI 344
>SB_49353| Best HMM Match : AfsA (HMM E-Value=5.5)
Length = 222
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 256 APRNATLTLSAHDLRSAQ-PSPQTPKYVETAAN 161
+P N+T LS A+ P +TP++VE AA+
Sbjct: 29 SPGNSTRPLSLKSFEEARSPGARTPEFVEVAAD 61
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 192 CGEGWAERRSCAE 230
CG+GW ER+ C E
Sbjct: 2313 CGDGWDERQDCRE 2325
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 173 DRCELYMSQSFLTTGIINAISAAATVTLEFER 78
++C+ ++ S +IN++S+ TLE ER
Sbjct: 4049 EKCQFALNASLFFFEVINSLSSVVNSTLEIER 4080
>SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 260 VGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQS 144
V PS R + T SP S+ V +RCE+Y ++S
Sbjct: 407 VPPSSRGNLRLGTTVKASPKSSSQVSVAMNRCEVYNTRS 445
>SB_14904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = -2
Query: 281 PTARGDSVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTTGIINAISAAA 102
P +GD V PSE + T P + F+ + R +L ++ F T + S
Sbjct: 10 PIRKGDGVTPSEDEFAKLLTDPTFTDYFNTFLSLPVSRTQLVPTRFFCCTSLWTTYSRII 69
Query: 101 TVTL 90
T L
Sbjct: 70 TSLL 73
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +1
Query: 136 VKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAP 306
+K + D Y R + S + S R S SRS P R+ P R +P
Sbjct: 599 IKKERDSYRKSRDKGRKRSQSRSS-SRSRSSSYSRSRSRSPDRRKRSYSPPPRRRSP 654
>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 57 IDVIPLKTFKFKSHRCRRRDGVYDAGSQERL 149
+D L+TF SH+ R R +Y +GS+E +
Sbjct: 456 LDARMLQTF-ISSHKSRTRSTLYSSGSEESI 485
>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 853
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 281 PTARGDSVGPSERDSDTFRTRP--PLSPTFSAD 189
PTA D GPS+ + T + P P PT S+D
Sbjct: 139 PTAPSDPTGPSDPTAPTGPSDPTGPSDPTVSSD 171
>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 124 MMPVVKNDWDIYNSQRSRRTSESAEKVGL 210
+ + K+DWD +S RRT + +E + L
Sbjct: 728 LFAIFKDDWDRIHSNAKRRTGKESELMEL 756
>SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)
Length = 373
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 19 LFSVIELQFFVIQLTLFP*KRSNSRVTVA-AAEMAFMMPVV 138
+F +QF+VI LFP + R T+A ++AF M +V
Sbjct: 279 IFLTYFIQFYVITSILFPFVKGRVRQTIAPLVDIAFRMLLV 319
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 227 RTRPPLSPTFSADSEVRRDRCELYMSQSFLTTG 129
+T P PT + + RR + E+Y+S S T G
Sbjct: 613 QTPSPPKPTKAQKRKARRAKLEMYLSMSLNTQG 645
>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2195
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 190 SAEKVGLSGGRVR----KVSESRSEGPTLSPRAVGLSPH 294
SAEK+GL G R R + + S S G S GLS +
Sbjct: 981 SAEKIGLGGSRTRRSLPRPNYSTSSGEANSTEIFGLSKY 1019
>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
Length = 2195
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +1
Query: 85 NSRVTVAAAEMAFMMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRV 225
+SRV++ A +A + P+ W + N ++ + K+ ++ G V
Sbjct: 13 DSRVSIGKANIAKVFPLGDFHWPLNNITNAKLNETALNKIAVAYGNV 59
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 266 DSVGPSERDSDTFRTRPPLSPT 201
+++ S+ DSDT + PP SPT
Sbjct: 503 EAIKESDSDSDTSDSSPPTSPT 524
>SB_40272| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=2.4)
Length = 843
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 227 RTRPPLSPTFSADSEVRRDRCELYMSQSFLTTG 129
+T P PT + + RR + E+Y+S S T G
Sbjct: 667 KTPLPPKPTKAQKRKARRAKLEMYLSMSLNTQG 699
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 136 VKNDWDIYNSQRSRRTSESAEKVGLSGG 219
VK+ W+ SQ R TSE + G +GG
Sbjct: 66 VKDKWENLLSQAKRETSEFERERGKTGG 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,098,226
Number of Sequences: 59808
Number of extensions: 166130
Number of successful extensions: 614
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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