Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_D24
(327 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31620.1 68417.m04492 transcriptional factor B3 family protei... 29 0.97
At4g29440.1 68417.m04203 expressed protein contains Pfam profil... 28 1.3
At2g06020.1 68415.m00658 myb family transcription factor contain... 28 1.3
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 28 1.7
At5g28250.1 68418.m03425 Ulp1 protease family protein contains P... 27 3.0
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 27 3.0
At3g52450.1 68416.m05768 U-box domain-containing protein similar... 27 3.0
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 3.0
At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C... 27 3.9
At2g25200.1 68415.m03014 expressed protein 27 3.9
At1g55600.1 68414.m06364 WRKY family transcription factor simila... 27 3.9
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 26 5.2
At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein co... 26 5.2
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p... 26 5.2
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 26 6.8
At4g00390.1 68417.m00053 expressed protein contains Pfam profil... 26 6.8
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 26 6.8
At2g37360.1 68415.m04582 ABC transporter family protein 26 6.8
At1g09710.1 68414.m01090 myb family transcription factor contain... 26 6.8
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 26 6.8
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 26 6.8
At3g02170.1 68416.m00190 expressed protein 25 9.0
>At4g31620.1 68417.m04492 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 492
Score = 28.7 bits (61), Expect = 0.97
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 206 PTFSADSEVRRDRCELYMSQSFLTTGIINAISAAATVTLEFERF*GNNVNCMTKNCS 36
P++ + S+ RR E YM+ ++ N + T TLEF R G M K CS
Sbjct: 330 PSYVSSSKQRR---EFYMAHGWIRFCEANKLKTGETFTLEFVR--GEGTTPMLKFCS 381
>At4g29440.1 68417.m04203 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 1090
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 172 SRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRSLSY 327
SRRT + L ++ KVS P LSP A L+ + + + SLSY
Sbjct: 857 SRRTKGQERRPSLVTAKIDKVSFDEESPPKLSPEAKPLTKQQGSAS--SLSY 906
>At2g06020.1 68415.m00658 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 301
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 133 VVKNDWDIYNSQRSRRTSESAEKVGLSGG 219
+++++ + YN + + T E+AEKVG+ G
Sbjct: 40 ILQSNKETYNEKLEKNTKENAEKVGIEEG 68
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 64 LFP*KRSNSRVTVAAAEMAFMMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSES 243
L P + NS V V E A + +ND + Q+ +S E++GL +R +++
Sbjct: 6 LKPVEDVNSEV-VDEVEKAEEVEEQRNDREQEEEQKEEEAPKSFEELGLDSRLIRALTKK 64
Query: 244 RSEGPTL 264
E PTL
Sbjct: 65 GIEKPTL 71
>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 939
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 275 ARGDSVGPSERDSD-TFRTRPPLSPT 201
AR S+ P+ RDSD F T PP +P+
Sbjct: 626 ARETSLSPTHRDSDEDFTTPPPSNPS 651
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 163 SQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRS 300
S+ S S + +V + GR+ K+ E ++ S + G+ P RS
Sbjct: 975 SKNSSSLSTNKGRVAPTAGRLAKIEEDKALAENSSKTSEGMEPRRS 1020
>At3g52450.1 68416.m05768 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 435
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 82 SNSRVTVAAAEMAFMMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRS 249
+N R AA F+ +V N D YNS S +S + + S + SRS
Sbjct: 128 TNKRCLEAAEVPEFLANIVSNSVDTYNSPSSSLSSSNLNDMCQSNMLENRFDSSRS 183
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Frame = -2
Query: 287 LSPTARGDSVGPSERDSDTFRTRPP-----LSPTFSA 192
+SPT R PS + S +FR PP +SP+F A
Sbjct: 448 MSPTFRATPPPPSSKMSPSFRATPPPPSSKMSPSFRA 484
>At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; similar to protein phosphatase 2C (GI:10432446)
[Nicotiana tabacum]
Length = 416
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 160 NSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVG 282
N + R E A ++ +GGRV V +R EG + RA+G
Sbjct: 267 NDHKPDRPDERA-RIEAAGGRVLVVDGARVEGILATSRAIG 306
>At2g25200.1 68415.m03014 expressed protein
Length = 354
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 220 DLRSAQPSPQTPKYVETAAN 161
DL SA PSP P Y+ T+ +
Sbjct: 28 DLPSALPSPSNPSYISTSGD 47
>At1g55600.1 68414.m06364 WRKY family transcription factor similar
to SPF1 protein GI:484261 from [Ipomoea batatas];
contains Pfam profile: PF03106 WRKY DNA -binding domain
Length = 485
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 307 PARCDADSARRREATALAPRNATLTLSAHDLRSAQPSPQTP 185
PAR S+R R A A P+N S P+P TP
Sbjct: 367 PARRSNSSSRNRSAGATIPQNQNDRTSRLGRAPPTPTPPTP 407
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 55 QLTLFP*KRSNSRVTVAAAEMAFMMPVVKNDWDIYNSQRSRRTSESAEKVGLS-GGRVRK 231
Q L P +R+ VAA E PVV D + S++S + +++ G + GR +
Sbjct: 65 QFVLHPHRRATGTDVVAAVEEQDSTPVVAEDKETVASEKSDAPAPTSQSRGTARPGRKSE 124
Query: 232 VSESRSE 252
+ ++E
Sbjct: 125 MPAVKNE 131
>At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 637
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 82 SNSRVTVAAAEMAFMMPVVKNDWDIYNSQRSRRTSESAEKVGLSGGRVRKVSESRSEGPT 261
+N + V+ A + V+ NDW NS++ R+ + S E++ + S SE
Sbjct: 454 NNLQHVVSRARSTNVKHVLGNDWIAKNSEKVRQFARSYERLAWGPLASMCPAISTSEAVE 513
Query: 262 LSP 270
+SP
Sbjct: 514 MSP 516
>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
protein similar to SP|P52565 Rho GDP-dissociation
inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
contains Pfam profile PF02115: RHO protein GDP
dissociation inhibitor
Length = 223
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 296 RCGLSPTARGDSVGPSERDSDTFRTRPPLSPTFSADSEVRRDR 168
+ GLS G S+ P+E D + + L P + ++ RD+
Sbjct: 19 KMGLSRKNSGSSLSPTEDDEEDEDKKLELGPMIALKEQLERDK 61
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 295 DADSARRREATALAPRNATLTLSAHDLRSAQPSPQT 188
D +A ++T LAP + T +A ++ + PSP+T
Sbjct: 309 DQSAAPSDQSTPLAPSPSETTPTADNITAPAPSPRT 344
>At4g00390.1 68417.m00053 expressed protein contains Pfam profile:
PF04504 protein of unknown function, DUF573
Length = 364
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 287 LSPTARGDSVGPSERDSDTFRTRPPLSPTFSADSEVRRD 171
+S A DS SE DSD+ T PP S + + ++D
Sbjct: 73 VSAAADSDSGSESETDSDSESTDPPKSGSGKTIASKKKD 111
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 25.8 bits (54), Expect = 6.8
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = +1
Query: 157 YNSQRSRRTSESAEKV-----GLSGGRVRKVSESRSEGPTLSPRA-VGLSPHRS 300
Y S RSR S S + S GR R S SRS + SPR + SP RS
Sbjct: 198 YESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRS 251
>At2g37360.1 68415.m04582 ABC transporter family protein
Length = 755
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 132 GSQERLGHIQFAAVSTYFGVCGE 200
G+QERLG F A+ST F C E
Sbjct: 496 GAQERLGFFAF-AMSTTFYTCAE 517
>At1g09710.1 68414.m01090 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 689
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 181 TSESAEKVGLSGGRVRKV--SESRSEGPTLSPRAVGLSPHRSAPAMRSLS 324
TS +A L+ G+++ V S S ++ P ++PR+ G S ++ + SLS
Sbjct: 497 TSVAASIRSLANGKLKPVMASSSSNKPPLIAPRSEGSSMLSASAPLASLS 546
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 25.8 bits (54), Expect = 6.8
Identities = 20/50 (40%), Positives = 21/50 (42%)
Frame = +1
Query: 169 RSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRS 318
RSR S S S R S SRS GP R+ SP RS RS
Sbjct: 226 RSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSP--SPRRSRSRSRS 273
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 25.8 bits (54), Expect = 6.8
Identities = 20/50 (40%), Positives = 21/50 (42%)
Frame = +1
Query: 169 RSRRTSESAEKVGLSGGRVRKVSESRSEGPTLSPRAVGLSPHRSAPAMRS 318
RSR S S S R S SRS GP R+ SP RS RS
Sbjct: 226 RSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSP--SPRRSRSRSRS 273
>At3g02170.1 68416.m00190 expressed protein
Length = 905
Score = 25.4 bits (53), Expect = 9.0
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = -2
Query: 311 IAGALRCGLSPTARGDSVGPSERDSDTFRTRPPLSPTFSADSEVRRDRCELYMSQSFLTT 132
++G L P R SVG + +SD R SA E R E SF ++
Sbjct: 42 VSGGAEKSLPPGERRGSVGETNMESDKETERSSTKKKKSAAKEKHRVSFESSSRPSFSSS 101
Query: 131 GIINAISAAATVT 93
++ S+A T
Sbjct: 102 PRSSSFSSAEVST 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,176,332
Number of Sequences: 28952
Number of extensions: 111583
Number of successful extensions: 415
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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