Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D23
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)                 27   5.3  
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)                 27   7.1  
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           27   7.1  
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)                    27   7.1  
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_50529| Best HMM Match : 7TMR-HDED (HMM E-Value=2.3)                 27   9.3  
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_11307| Best HMM Match : Pam16 (HMM E-Value=5.4)                     27   9.3  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +2

Query: 116 EDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAA 295
           +++P       V+ +    T+N    +   +K  + GN +  L A  S    N  K G  
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707

Query: 296 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 400
              ++Y DN+N   A  T +  IPG   K  +  KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744


>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 57  SASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL*LETKI 236
           SA+TA   S+   + TL    +S ++GPTP  + ++   L+ + +   L      + + +
Sbjct: 113 SATTAQDSSVLDTLATLATATLSHNTGPTPSTSMQQATSLAGRISVTPLTLSQNTISSSL 172

Query: 237 TG-SVPLAP 260
           +G S PL P
Sbjct: 173 SGLSTPLTP 181


>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 75  TCSLKSLVTTLNNMRISRSSGPTPGC 152
           T + K+++TTL  MRI  ++GP   C
Sbjct: 654 TTTKKTIITTLTTMRICAANGPLIDC 679


>SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 148 GAPASGCTNCQLRRHLRCYGQGTYNWKRKS 237
           G PA    N QL R  RC    TY W RKS
Sbjct: 73  GKPAYFAKNLQLDRK-RCLYPKTYTWDRKS 101


>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
          Length = 1336

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +2

Query: 68   SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLS 247
            +R   + EP   ++  EDQ E  A+S +R +AG     +D   G + +   T N NH   
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239

Query: 248  ALGSVDLTNQMKLGAATAGLAYDNVNG 328
             +      + +K G        D++ G
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKG 1265


>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
          Length = 624

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
 Frame = +2

Query: 86  EEPGYYIEQYE--DQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGS 259
           E   Y  E+YE  D     AN     QA +   N+  ++G ++ + ++G  + ++ A  S
Sbjct: 113 ERSEYGGERYETSDFQRSVANRYKELQADSWKKNNVTSAGGLLSLDLSGEGHFKVHANAS 172

Query: 260 VDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGF 367
             +            + Y  +    A L   HIPGF
Sbjct: 173 TAIPAAETTDWPQENI-YSTIQYQEAPLPPAHIPGF 207


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 169  TNCQLRRHL-RCYGQGTYNWKRKSQAQCPWLRRS 267
            TN Q    L R Y    YNW+   + + PWL ++
Sbjct: 1207 TNIQTNVSLVRKYNSWEYNWRNSLEKRMPWLGKT 1240


>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 1745

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 39  SYQFFWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL 218
           S+  FW +S+  + S  S+  +L+++R   S        G  +  LS  T P   W+R++
Sbjct: 376 SHSGFWFSSSRFSRSSSSISDSLSSLRSRASWRRLTDVLGSSMVSLSVATTPCSSWARFV 435


>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 269 TNQMKLGAATAGLAYDNVNGHGAT--LTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKA 439
           TNQ  L        Y+ +N   A   L  + +P  G+K   +G+ N+   D  DFS  A
Sbjct: 59  TNQTLLHVVVLDTQYERMNSTYACALLANSRLPCVGEKDCESGEGNISSIDMKDFSNAA 117


>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 80  LVEEPGYYIEQYEDQPEQW 136
           L EEPGYYIE  +  PE W
Sbjct: 210 LDEEPGYYIE--KKAPESW 226


>SB_50529| Best HMM Match : 7TMR-HDED (HMM E-Value=2.3)
          Length = 697

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 51  FWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL 218
           FW +S+  + S  S+  +L+++R   S        G  +  LS  T P   W+RY+
Sbjct: 262 FWFSSSRFSRSSSSISDSLSSLRSRASWRRLSDVLGSSMVSLSGATTPCSSWTRYV 317


>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +2

Query: 365 FGDKMTAAG---KVNLFHNDNHDFSAKAF 442
           F ++ T++G   KV LFH  N+ F+AK+F
Sbjct: 35  FAEQDTSSGLTTKVCLFHGKNNPFTAKSF 63


>SB_11307| Best HMM Match : Pam16 (HMM E-Value=5.4)
          Length = 405

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 51  FWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL 218
           FW +S+  + S  S+  +L+++R   S        G  +  LS  T P   W+RY+
Sbjct: 69  FWFSSSRFSRSSSSISDSLSSLRSRASWRRLSDVLGSSMVSLSGATTPCSSWTRYV 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,870,466
Number of Sequences: 59808
Number of extensions: 300625
Number of successful extensions: 776
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)