Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D22
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   126   2e-30
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.35 
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.4  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   3.3  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   3.3  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   4.3  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   4.3  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   5.7  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    25   5.7  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   7.5  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   10.0 

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  126 bits (305), Expect = 2e-30
 Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
 Frame = +3

Query: 96  RAIAHLVGEN-IRGNITFTRLP-DGKVHVEGSIVGLPPG-HYGFHVHEKGDISGGCGSTG 266
           RA+A L G++ + G +TF ++  + +V V   +VG       GFH+H+ GD + GC S G
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 267 SHFNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHE 446
            HFNPE K HG  +   RHVGDLGN E D   + K    D  +++ GA+ I+GR +V+H 
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122

Query: 447 RADDFGRTDHPDSRKTGNAGGRVACGVIGI 536
             DD G+    +S KTGNAG R ACGVIGI
Sbjct: 123 GEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 529 MTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 398
           +TP   +PPA PV  E+    +P ++  +    + P+ P APV+
Sbjct: 510 ITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVV 553



 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 535 IPMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVMARCG 386
           +P  P   + PA+PV  E+    +P ++       ++P+ P  PV+   G
Sbjct: 643 VPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAG 692



 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 535 IPMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 398
           +P  P   + PA+PV  E+    +P  +  +    ++P+ P APV+
Sbjct: 553 VPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVV 598



 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 532 PMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 398
           P  P   +PP  PV  E+    +P  +  +    ++P+ P  PV+
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVV 628



 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 532 PMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 398
           P  P   + PA+PV  E+    +P ++       ++P+ P  PV+
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVV 658


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 282 ENKE-HGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAI 401
           ENK  HG   D+     D  + E  K Y+SKI+ ID  + I
Sbjct: 85  ENKSVHGMTIDDIMDEEDRADQELSKVYTSKINTIDTSIPI 125


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 120 ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPE-NKEH 296
           EN+   +  TR+ DGK  V      +  G + F  H+  ++    G   S+F+ E  + H
Sbjct: 30  ENVFMKLVMTRMLDGKTEVIPLTTDVHNGFWRFGRHKSCEVVLN-GPRVSNFHFEIYQGH 88

Query: 297 GHPSDENRHV 326
            + SDE+ +V
Sbjct: 89  RNDSDESENV 98


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 270 HFNPENKEHGHPSDENRH 323
           H N  + EH HPS E+ H
Sbjct: 380 HLNGSSGEHSHPSHEHTH 397


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 202 GGSPTIDP-STWTLPSGSRVNVILPLMFSPT 113
           GGS    P S + +PS S VN+  PL+ SP+
Sbjct: 395 GGSMPKGPNSIYKIPSASMVNLSSPLVTSPS 425


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 321 HVGDLGNAEFDKNYSSKIDMIDPHL 395
           HV + GN  FD  + S + ++D  L
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 261 TGSHFNPENKEHGHPSDENRHVGDLGN 341
           T  + +PE+   G PSD N     LGN
Sbjct: 462 THKNISPESSRFGTPSDPNSSSQSLGN 488


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 400 LPEHTGFSAGLWFYTSGLMISAALTTQIREKPAT 501
           LP+   F+ G  F  +GL     L  Q++ KP T
Sbjct: 134 LPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGT 167


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 529 MTPQATRPPALPVFLESGWSVRPKSSARS 443
           +TP+  R   LP F    WS R  S  RS
Sbjct: 685 VTPEYLRTDVLPEFFHCFWSRRMASDRRS 713


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 188 DRSFYVDLAVRQPSERNIASDVLP 117
           D S Y+  ++  PSE ++AS ++P
Sbjct: 213 DASSYITFSIPVPSEFSLASHIIP 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,185
Number of Sequences: 5004
Number of extensions: 48132
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)