Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D22
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               151   4e-37
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                60   2e-09
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                50   1e-06
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         38   0.006
SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)             30   1.5  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               29   1.9  
SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)                    29   3.4  
SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)                   28   4.5  
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           28   4.5  
SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)                27   7.9  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  151 bits (366), Expect = 4e-37
 Identities = 69/129 (53%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
 Frame = +3

Query: 153 LPDGK-VHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRHVG 329
           + +GK   + G+I GL  G++GFH+H  GD + GC S G HFNP  KEHG PSDENRHVG
Sbjct: 22  MAEGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVG 81

Query: 330 DLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERADDFGRTDHPDSRKTGNAGG 509
           DLGN     +  + IDM D  + + G H ++GR+VV+H   DD GR  H DS+ TG+AGG
Sbjct: 82  DLGNVVAGDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGG 141

Query: 510 RVACGVIGI 536
           R+ACGVIGI
Sbjct: 142 RLACGVIGI 150


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 30/70 (42%), Positives = 41/70 (58%)
 Frame = +3

Query: 321 HVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERADDFGRTDHPDSRKTGN 500
           HVGDLGN   ++N  +     D  + +     I+GRA+V+H   DD GR  H  S+ TGN
Sbjct: 1   HVGDLGNIIANQNGRATFRFEDKTVKVWD---IIGRAIVVHADEDDLGRGGHELSKSTGN 57

Query: 501 AGGRVACGVI 530
           +G RV CG+I
Sbjct: 58  SGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 21/48 (43%), Positives = 33/48 (68%)
 Frame = +3

Query: 294 HGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVV 437
           HG P D++RH+GDLGN E D N  + + + D  +++TG   I+GR++V
Sbjct: 2   HGAPEDKDRHLGDLGNIEADANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
 Frame = +3

Query: 126 IRGNITFTRL-PDGKVHVEGSIVGLPPGHYGFHVHE-----KGDISGGCGST--GSHFNP 281
           IRG +TFT+  P+   +++ ++ G+      + +H+     KG+ +  C +   G+ ++P
Sbjct: 66  IRGTVTFTQSSPNTSTNIKLALTGVNET-LSWQIHDLPVIYKGNAATTCNTVALGNLYDP 124

Query: 282 ENKEHGHPSDENRH---VGDL-GNAEF-DKNYSSKIDMIDPHLAITGAHGILGRAVVL 440
           +       S   +    VGDL G   F D N  S +   D +L +TG HGI GR +VL
Sbjct: 125 DGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIFGRTLVL 181


>SB_57208| Best HMM Match : Ion_trans (HMM E-Value=5.5e-34)
          Length = 722

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 403 PEHTGFSAGLWFYTSGLMISAALTTQIREKPATLVDASPAVSSEY 537
           PE + F   LW+Y SGLMI+ ++   + E      D S    ++Y
Sbjct: 165 PEKSFFGL-LWYYVSGLMIALSIACTVAETIPPPCDESVICGAQY 208


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +3

Query: 132 GNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDI-----SGGCGSTGSHFNPENK 290
           G ITFTRLP  +V V      L    + FHV E  +I     + G  + GSH N +NK
Sbjct: 560 GLITFTRLPPSQVQVFEGTHNLSL-TWSFHVVEGENIFTLSFNRGENTIGSHSNDDNK 616


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 256 PQPPDMSPFSWTWNP*WPGGSPTIDPSTWTLPSGSRVNVILPLMFSPT 113
           P  P MSP S +++P  PG SP+  PS+   P+    +   P  +SPT
Sbjct: 421 PSSPSMSPASPSYSPTSPGYSPS-SPSSGYSPASPSYSPTSP-SYSPT 466


>SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)
          Length = 508

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +3

Query: 192 GLPPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRH 323
           G P   YG H    G  S G G   + +   +  +GHPS    H
Sbjct: 317 GHPSTRYGPHSTRYGHPSTGYGHPSTRYGHPSTRYGHPSTRYGH 360


>SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)
          Length = 380

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 273 FNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHL 395
           F PE  E     DEN   GD+ N + D  Y   ++  DP L
Sbjct: 333 FYPEFDEEDDDDDENEFEGDMANGD-DHFYEDFLEAEDPAL 372


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 532  PMTPQATRPPALPVFLESGWSVRPKSS 452
            P TP A RP   P+    G+ +RP+S+
Sbjct: 1489 PATPTAVRPRGSPIRARGGFCLRPESA 1515


>SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/85 (24%), Positives = 30/85 (35%)
 Frame = +3

Query: 72   HHERSQPTRAIAHLVGENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGG 251
            HH     T  +      ++ GN T     +   HV+G+     PG+   HV   G  +  
Sbjct: 829  HHVPGYTTHHVPGNTAHHVPGNTTHHVPGNTTYHVQGNTAHHVPGNKTHHV--PGYTTHH 886

Query: 252  CGSTGSHFNPENKEHGHPSDENRHV 326
                 +H  P N  H  P     HV
Sbjct: 887  VPGNTTHHVPGNTTHHVPGYTTHHV 911


>SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 174 VEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPEN 287
           VEG  V       G   H+  DI  GCG +  HF   N
Sbjct: 173 VEGESVWWKKVEDGVEFHDVTDIPSGCGPSLHHFRSSN 210


>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1301

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 198 PPGHYGFHVHEKGDISGGCGSTGSHFNPENKEHGHPSDENRHVGDLGNAEFDKNY 362
           P  H   H      I    G +G+     NKE  H  D+++ V  LGN   D+++
Sbjct: 344 PSNHNDKHASGSEGILFDTGKSGT----TNKEEPHEIDDHKKVESLGNLSSDEDF 394


>SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)
          Length = 366

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 330 DLGNAEFDKNYSSKIDMIDPHLAI 401
           DLG     KN+++K+D I PHL I
Sbjct: 96  DLGIILLVKNFNAKLDNIGPHLKI 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,218
Number of Sequences: 59808
Number of extensions: 397060
Number of successful extensions: 1377
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)