Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_D20
         (400 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q66FM4 Cluster: Possible type III secretion protein Esc...    32   4.8  
UniRef50_UPI00003603ED Cluster: Nucleotide-binding oligomerizati...    31   8.3  

>UniRef50_Q66FM4 Cluster: Possible type III secretion protein
           EscC/SpiA, outer membrane pore; n=22;
           Proteobacteria|Rep: Possible type III secretion protein
           EscC/SpiA, outer membrane pore - Yersinia
           pseudotuberculosis
          Length = 523

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 295 IIWYLNNHLMYFTEKQNFKRRFYFADHLTGSTYVQHGQ 182
           I WY +   +YF   Q+ KR F   D L  +T V++ Q
Sbjct: 114 ITWYYDGETLYFYPVQSIKREFISPDGLAANTLVKYLQ 151


>UniRef50_UPI00003603ED Cluster: Nucleotide-binding oligomerization
           domain-containing protein 1 (Caspase recruitment
           domain-containing protein 4).; n=3; Clupeocephala|Rep:
           Nucleotide-binding oligomerization domain-containing
           protein 1 (Caspase recruitment domain-containing protein
           4). - Takifugu rubripes
          Length = 927

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 121 K*YITYKFSEKNHSHFIKIQFDRVAHKWILSNGP 222
           K YI+  F E+ H   + +Q D   H W L + P
Sbjct: 342 KTYISLHFKEQEHRELVSVQLDASPHLWSLCSTP 375


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,599,845
Number of Sequences: 1657284
Number of extensions: 4848912
Number of successful extensions: 12134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12098
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)